Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c21r
         (764 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.11 
SB_36536| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.25 
SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)                      33   0.33 
SB_6780| Best HMM Match : DM4_12 (HMM E-Value=5.3)                     32   0.44 
SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)                      29   4.1  
SB_46013| Best HMM Match : DUF1129 (HMM E-Value=0.23)                  29   5.4  
SB_8817| Best HMM Match : I-set (HMM E-Value=0)                        28   7.2  
SB_20883| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3160

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 50/189 (26%), Positives = 85/189 (44%), Gaps = 5/189 (2%)
 Frame = -2

Query: 682  EVDLNLNTTVKILDKGRDLCYDDDSTIY--VASNDGIYVYKTG--DKSFKKYGTFKADVI 515
            EV+L  +T +  L    +  YD  ST    + SN+ + + K+   DK     G   A   
Sbjct: 1664 EVELAKSTNIDKLVSNNEDEYDAKSTNIDKLVSNNEVELAKSTNIDKLVSNNGVELAKST 1723

Query: 514  SLTKMNGSDLFYAVTNDNKAYKVTENGNKYVLDDKLKAVKQVMFDNFNVLHYVTLDNEVF 335
            ++ K+        V+N+      + N NK V +++++  K    D       +  +NEV 
Sbjct: 1724 NIDKL--------VSNNEVELAKSTNINKLVSNNEVELAKSTNIDK------LVSNNEVE 1769

Query: 334  KVKET-MEKIDFNVKIDYVRLLKSSATEDDALFLLVNNDLVVIKSTGILKVVENLGKVSA 158
              K T ++K+  N + +Y     + +T  D L  + NN++ + KST I K+V N G   A
Sbjct: 1770 LAKSTNIDKLVSNNEDEY----DAKSTNIDKL--VSNNEVELAKSTNIDKLVSNNGVELA 1823

Query: 157  FSKETDSLL 131
             S   D L+
Sbjct: 1824 KSTNIDKLV 1832



 Score = 31.5 bits (68), Expect = 0.77
 Identities = 29/92 (31%), Positives = 46/92 (50%)
 Frame = -2

Query: 415  DKLKAVKQVMFDNFNVLHYVTLDNEVFKVKETMEKIDFNVKIDYVRLLKSSATEDDALFL 236
            DKL +  +V+      +  +  +NEV   K T   ID  V  +   L KS+  +     L
Sbjct: 1434 DKLVSNNEVVLAKSTNIDKLVSNNEVVHAKST--NIDKLVSNNKGELAKSTNIDK----L 1487

Query: 235  LVNNDLVVIKSTGILKVVENLGKVSAFSKETD 140
            + NN++V+ KST I K+V N  +V   +K T+
Sbjct: 1488 VSNNEVVLAKSTNIDKLVSN-NEVEYDAKSTN 1518



 Score = 30.7 bits (66), Expect = 1.3
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
 Frame = -2

Query: 415  DKLKAVKQVMFDNFNVLHYVTLDNEVFKVKET-MEKIDFNVKIDYVRLLKSSATEDDALF 239
            DKL +  +V       +  +  +NEV   K T ++K+  N + +Y     + +T  D L 
Sbjct: 1640 DKLVSNNEVELAKSTNIDKLVSNNEVELAKSTNIDKLVSNNEDEY----DAKSTNIDKL- 1694

Query: 238  LLVNNDLVVIKSTGILKVVENLGKVSAFSKETDSLL 131
             + NN++ + KST I K+V N G   A S   D L+
Sbjct: 1695 -VSNNEVELAKSTNIDKLVSNNGVELAKSTNIDKLV 1729



 Score = 29.9 bits (64), Expect = 2.3
 Identities = 23/71 (32%), Positives = 37/71 (52%)
 Frame = -2

Query: 343  EVFKVKETMEKIDFNVKIDYVRLLKSSATEDDALFLLVNNDLVVIKSTGILKVVENLGKV 164
            E  +VK+  E+    +K +   L +S+  +     L+ NN++V+ KST I K+V N   V
Sbjct: 1388 ECLEVKKLAEEKAILMKQEQAALRQSTNIDK----LVSNNEVVLAKSTNIDKLVSNNEVV 1443

Query: 163  SAFSKETDSLL 131
             A S   D L+
Sbjct: 1444 LAKSTNIDKLV 1454



 Score = 29.5 bits (63), Expect = 3.1
 Identities = 35/112 (31%), Positives = 54/112 (48%)
 Frame = -2

Query: 475  VTNDNKAYKVTENGNKYVLDDKLKAVKQVMFDNFNVLHYVTLDNEVFKVKETMEKIDFNV 296
            V+N+      + N +K V ++K +  K     N N L     +NEV   K T   ID  V
Sbjct: 1540 VSNNEVELAKSTNIDKLVSNNKGELAKST---NINKL---VSNNEVVLAKST--NIDKLV 1591

Query: 295  KIDYVRLLKSSATEDDALFLLVNNDLVVIKSTGILKVVENLGKVSAFSKETD 140
              + V L KS+  +     L+ NN++ + KST I K+V N  +V   +K T+
Sbjct: 1592 SNNEVELAKSTNIDK----LVSNNEVELAKSTNIDKLVSN-NEVEYDAKSTN 1638



 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -2

Query: 238  LLVNNDLVVIKSTGILKVVENLGKVSAFSKETDSLL 131
            L+ NN++V+ KST I K+V N   V A S   D L+
Sbjct: 1436 LVSNNEVVLAKSTNIDKLVSNNEVVHAKSTNIDKLV 1471



 Score = 29.1 bits (62), Expect = 4.1
 Identities = 30/95 (31%), Positives = 43/95 (45%)
 Frame = -2

Query: 415  DKLKAVKQVMFDNFNVLHYVTLDNEVFKVKETMEKIDFNVKIDYVRLLKSSATEDDALFL 236
            DKL +  +V       +  +  +NEV   K T   ID  V  +   L KS+        L
Sbjct: 1520 DKLVSNNEVELAKSTNIDKLVSNNEVELAKST--NIDKLVSNNKGELAKSTNINK----L 1573

Query: 235  LVNNDLVVIKSTGILKVVENLGKVSAFSKETDSLL 131
            + NN++V+ KST I K+V N     A S   D L+
Sbjct: 1574 VSNNEVVLAKSTNIDKLVSNNEVELAKSTNIDKLV 1608



 Score = 28.3 bits (60), Expect = 7.2
 Identities = 27/73 (36%), Positives = 36/73 (49%)
 Frame = -2

Query: 349  DNEVFKVKETMEKIDFNVKIDYVRLLKSSATEDDALFLLVNNDLVVIKSTGILKVVENLG 170
            +NEV   K T   ID  V  + V L KS+  +     L+ NN++V  KST I K+V N  
Sbjct: 1422 NNEVVLAKST--NIDKLVSNNEVVLAKSTNIDK----LVSNNEVVHAKSTNIDKLVSNNK 1475

Query: 169  KVSAFSKETDSLL 131
               A S   D L+
Sbjct: 1476 GELAKSTNIDKLV 1488


>SB_36536| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1258

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 24/82 (29%), Positives = 42/82 (51%)
 Frame = -2

Query: 370 VLHYVTLDNEVFKVKETMEKIDFNVKIDYVRLLKSSATEDDALFLLVNNDLVVIKSTGIL 191
           V+  V+  N V + ++  E    N  +  +  + S  TE    FLL  ND+VV+ +  +L
Sbjct: 529 VIFIVSTQNLVLQQRQRFEAYLSNYAVCDISGVNS--TEIPLKFLLKANDVVVLTAQILL 586

Query: 190 KVVENLGKVSAFSKETDSLLIY 125
             ++N  ++S+ S    SLLI+
Sbjct: 587 NALQNKNELSSISLSDLSLLIF 608


>SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)
          Length = 1776

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 2/113 (1%)
 Frame = -2

Query: 670  NLNTTVKILDKGRDLCYDDDSTIYVASNDGIYVYKTGD--KSFKKYGTFKADVISLTKMN 497
            N N   K  +      Y++++     +ND  Y Y   +  K       +K +  +  K  
Sbjct: 746  NNNNKCKDTNNDNKYKYNNNNECKDTNNDNKYKYNNNNECKDTNNGNKYKYNNNNECKDT 805

Query: 496  GSDLFYAVTNDNKAYKVTENGNKYVLDDKLKAVKQVMFDNFNVLHYVTLDNEV 338
             +D  Y   N+NK  K T N NKY  ++K K           V+H   +  ++
Sbjct: 806  NNDNKYKYNNNNKC-KDTNNDNKYKHNNKYKVKNSKKMMGAGVVHPANITKDI 857


>SB_6780| Best HMM Match : DM4_12 (HMM E-Value=5.3)
          Length = 160

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 18/73 (24%), Positives = 31/73 (42%)
 Frame = -2

Query: 511 LTKMNGSDLFYAVTNDNKAYKVTENGNKYVLDDKLKAVKQVMFDNFNVLHYVTLDNEVFK 332
           LTK+  S+ F  +    K Y       + V +D ++  K+    +F  +  V L  E F 
Sbjct: 26  LTKVGHSNCFSLLVTSRKVYGAPGEVRQAVFEDVVRVCKEAELFSFEQVKAVHLHPEAFS 85

Query: 331 VKETMEKIDFNVK 293
           V+  +    F +K
Sbjct: 86  VENDLMTATFKIK 98


>SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1215

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/76 (22%), Positives = 34/76 (44%)
 Frame = -2

Query: 538 GTFKADVISLTKMNGSDLFYAVTNDNKAYKVTENGNKYVLDDKLKAVKQVMFDNFNVLHY 359
           G  K  +++L K++G ++   +TNDN      +  +   L D   A+  ++ +N      
Sbjct: 572 GKLKDVLVTLMKVSGEEIVKVLTNDNNDDDGDDGNDSDFLTDTFDALFAILNENARKYDK 631

Query: 358 VTLDNEVFKVKETMEK 311
           +  D  VF +    +K
Sbjct: 632 LVFDALVFTISLLADK 647


>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
          Length = 1291

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 27/107 (25%), Positives = 49/107 (45%)
 Frame = +2

Query: 314  FHSLFHFKYFIIQSDIVQYIEVIKHNLFDGFQFIIQNVFVTIFSDFVSFIVVCYGVKQIA 493
            +  L H  +  + S I+ +I V    +     F +  +F+T+FS  + FI V + V    
Sbjct: 1100 YRVLRHHPFITVFSVIILFITVFSVIILFITVFSVIILFITVFSVIILFITV-FSV---- 1154

Query: 494  SVHFC*AYNVSFESTIFFKAFISGFIYIYPVIASYVYRAVIIIT*IP 634
            ++ F   ++V+      F   I  FI ++ VI  ++    III  +P
Sbjct: 1155 TILFITVFSVTILFITVFSVIIL-FITVFSVIILFITVFSIIILLLP 1200


>SB_46013| Best HMM Match : DUF1129 (HMM E-Value=0.23)
          Length = 553

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = -2

Query: 748 SDGXIYTIHADVNDNRREKGVYEVDLNLNTTVKILDKGRDLCYDDDSTIYVASNDGIY 575
           +D  I      +NDN  +  +Y+ D ++N     ++   +   D+D++IY   N  IY
Sbjct: 287 NDNSINDNDNSINDN--DNSIYDNDNSINDNDNSINDNDNSINDNDNSIYDNDNSSIY 342


>SB_8817| Best HMM Match : I-set (HMM E-Value=0)
          Length = 2526

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
 Frame = -2

Query: 619 DDDSTIYVASNDGIYVYKTGDKSFKKYGTFKADVISLTKMNGSDLFYAVTND-NKAYKVT 443
           +DD  I    +DGI V +  D      G +K  V S    +       +  +  KA K+ 
Sbjct: 331 EDDRVIISEQDDGIVVLRIKDVGAHDSGVYKCQVSSDVGTSTKSFDVTIEGERRKAKKLI 390

Query: 442 ENGNKYVLDDKLKAVKQ 392
           E      L+ ++K VK+
Sbjct: 391 EVDETEHLEKRIKHVKE 407


>SB_20883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 672

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 7/122 (5%)
 Frame = -2

Query: 730 TIHADVNDNRREKGVYEVDLNLN------TTVKILDKGRDLCYDDDSTIYVASNDGIYV- 572
           T + D +  R EKG  +V   ++      T + +L+ G +   +   +    S   I V 
Sbjct: 292 TNYTDTSSLRLEKGEAQVKKGVSIAGLGETELTLLEDGENAESETKESKISRSPISISVP 351

Query: 571 YKTGDKSFKKYGTFKADVISLTKMNGSDLFYAVTNDNKAYKVTENGNKYVLDDKLKAVKQ 392
            K GD+  K Y     +V+     N S+  Y+V N +K   + E GN ++     ++ + 
Sbjct: 352 VKVGDEKTKGY---VYNVLKKEISNNSESDYSVINRSKTIPLLEKGNLHITKFPKRSWRA 408

Query: 391 VM 386
           +M
Sbjct: 409 IM 410


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,926,053
Number of Sequences: 59808
Number of extensions: 391524
Number of successful extensions: 1149
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)