Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c21r
         (764 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59260.1 68418.m07426 lectin protein kinase, putative similar...    30   1.5  
At1g78580.1 68414.m09158 alpha, alpha-trehalose-phosphate syntha...    30   1.9  
At3g24535.1 68416.m03081 expressed protein ; expression supporte...    29   4.5  
At3g16560.1 68416.m02116 protein phosphatase 2C-related / PP2C-r...    29   4.5  
At1g74700.1 68414.m08652 RNase Z identical to RNase Z (GI:209756...    28   5.9  
At3g50590.1 68416.m05533 transducin family protein / WD-40 repea...    28   7.8  
At3g01980.1 68416.m00155 short-chain dehydrogenase/reductase (SD...    28   7.8  
At2g33190.1 68415.m04066 F-box family protein contains F-box dom...    28   7.8  

>At5g59260.1 68418.m07426 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains protein kinase domain,
           Pfam:PF00069; contains legume lectins alpha and beta
           domains, Pfam:PF00138 and Pfam:PF00139
          Length = 674

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -2

Query: 712 NDNRREKGVYEVDLNLNTTVKILDK-GRDLCYDDDSTIYVASNDGIY 575
           NDN+    ++ V+L+ N   +  DK G D+  D +S + V S D  Y
Sbjct: 131 NDNKTATHIFAVELDTNQNSESFDKGGNDVGIDINSIVSVESADASY 177


>At1g78580.1 68414.m09158 alpha, alpha-trehalose-phosphate synthase,
           UDP-forming, putative / trehalose-6-phosphate synthase,
           putative / UDP-glucose-glucosephosphate
           glucosyltransferase, putative similar to
           trehalose-6-phosphate synthase SL-TPS/P [Selaginella
           lepidophylla] GI:4100325; contains Pfam profiles
           PF00982: Glycosyltransferase family 20, PF02358:
           Trehalose-phosphatase
          Length = 942

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 23/63 (36%), Positives = 31/63 (49%)
 Frame = -2

Query: 712 NDNRREKGVYEVDLNLNTTVKILDKGRDLCYDDDSTIYVASNDGIYVYKTGDKSFKKYGT 533
           N  RR   + E+DLNL+  +K   K   LC D  +TI V S     V    DK+F +Y  
Sbjct: 606 NQGRRGDQIKEMDLNLHPELKGPLKA--LCSDPSTTIVVLSGSSRSVL---DKNFGEYDM 660

Query: 532 FKA 524
           + A
Sbjct: 661 WLA 663


>At3g24535.1 68416.m03081 expressed protein ; expression supported
           by MPSS
          Length = 188

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 9/41 (21%), Positives = 25/41 (60%)
 Frame = +2

Query: 335 KYFIIQSDIVQYIEVIKHNLFDGFQFIIQNVFVTIFSDFVS 457
           +Y++  SD+++++       +  +  +++N F+ ++SDF S
Sbjct: 121 EYYV--SDVIEFLHCYSRLRYTAYLDVVENFFMEVYSDFFS 159


>At3g16560.1 68416.m02116 protein phosphatase 2C-related /
           PP2C-related contains protein phosphatase 2C domain
          Length = 493

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 24/71 (33%), Positives = 37/71 (52%)
 Frame = -2

Query: 517 ISLTKMNGSDLFYAVTNDNKAYKVTENGNKYVLDDKLKAVKQVMFDNFNVLHYVTLDNEV 338
           + +T + G DL+     D++A   T NGNK     KL+AV Q+  D+       T+DNEV
Sbjct: 279 VLVTLLVGKDLYVLNLGDSRAVLATYNGNK-----KLQAV-QLTEDH-------TVDNEV 325

Query: 337 FKVKETMEKID 305
            + +   E +D
Sbjct: 326 EEARLLSEHLD 336


>At1g74700.1 68414.m08652 RNase Z identical to RNase Z (GI:20975609)
           [Arabidopsis thaliana]
          Length = 280

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 26/125 (20%), Positives = 54/125 (43%), Gaps = 4/125 (3%)
 Frame = -2

Query: 736 IYTIHADVNDNRREKGVYEVDLNLNTTVKILDKGRDLCYDDDSTIYVASNDGIYVYKTGD 557
           ++ +H  ++ +  +  +  +D+     ++     +DL      T +V  + G  VY T  
Sbjct: 93  LFEVHRKLDSSELKHNLVGLDIGEEFIIR-----KDLKVKAFKTFHVIQSQGYVVYSTKY 147

Query: 556 KSFKKYGTFKADVISLTKMNGSDLFYAVTNDNKAYKVTENGNKYVLD----DKLKAVKQV 389
           K  K+Y     + I   K++G ++  ++     A+   +  + +V+D    D LKA   V
Sbjct: 148 KLKKEYIGLSGNEIKNLKVSGVEITDSIITPEVAF-TGDTTSDFVVDETNADALKAKVLV 206

Query: 388 MFDNF 374
           M   F
Sbjct: 207 MESTF 211


>At3g50590.1 68416.m05533 transducin family protein / WD-40 repeat
           family protein contains 3 WD-40 repeats (PF00400); some
           similarity to s-tomosyn isoform (GI:4689231)[Rattus
           norvegicus]; contains non-consensus AT-AC splice sites
           at intron 18
          Length = 1606

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/56 (19%), Positives = 32/56 (57%)
 Frame = +2

Query: 272 QEPNVIDFNIKIDFFHSLFHFKYFIIQSDIVQYIEVIKHNLFDGFQFIIQNVFVTI 439
           Q  ++  F+++++FF+      ++ ++S  ++ + ++ HNL  G   I + ++ +I
Sbjct: 446 QLKDIPPFHLELNFFNKPNRVLHYPVRSFYIEGLNLMAHNLCSGTDNIYKKLYTSI 501


>At3g01980.1 68416.m00155 short-chain dehydrogenase/reductase (SDR)
           family protein contains Pfam profiles: PF00106 short
           chain dehydrogenase, PF00678 short chain
           dehydrogenase/reductase C-terminus
          Length = 266

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
 Frame = -2

Query: 538 GTFKADVISLTKMNGSDL-FYAVTNDNKAYKVTENG----NKYVLDDKLKAVKQVMFDNF 374
           G F ADVI+L   + S++ F+A     KA++++ +     N Y    K++ + QV  D F
Sbjct: 54  GAFPADVIALDMESDSEVAFHAAVQ--KAWELSGHFDAFLNSYTYQGKVQDILQVSQDEF 111

Query: 373 NVLHYVTLDNEVFKVKETMEKIDFNVKIDYVRLLKSSATEDDALF 239
           + +  + L    F +K    ++  +     +  + + A+ + AL+
Sbjct: 112 HRITKINLTAPWFLLKAVATRMKDHGSGGSIVFMATIASGERALY 156


>At2g33190.1 68415.m04066 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 379

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 6/115 (5%)
 Frame = -2

Query: 652 KILDKGRDLCYDDDSTIYVASNDGIYVYKTGDK-----SFKKYGTFKADVI-SLTKMNGS 491
           K L    D  ++  + ++V   +G YV     K     S+KK G    D   S+T     
Sbjct: 146 KFLLTWNDFRFEKTAILWVNGRNGDYVVAWAIKQFYIFSYKKIGNDDDDKRWSITCTQCE 205

Query: 490 DLFYAVTNDNKAYKVTENGNKYVLDDKLKAVKQVMFDNFNVLHYVTLDNEVFKVK 326
           D+ Y    DNK Y  T +    +LD    + K+ M +N  + H  +  + ++K++
Sbjct: 206 DMAY---KDNKLYVYTFDHYINILDFSGNSPKEPMEENPYLSHPFSFVDAIYKLR 257


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,222,510
Number of Sequences: 28952
Number of extensions: 284445
Number of successful extensions: 836
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)