Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10c21f
(610 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 29 0.40
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 29 0.53
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 28 1.2
SPCC417.15 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 2.8
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 3.7
SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p... 26 3.7
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c... 26 3.7
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc... 25 6.5
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 25 6.5
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 6.5
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 8.7
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida... 25 8.7
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 25 8.7
>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1205
Score = 29.5 bits (63), Expect = 0.40
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +2
Query: 398 FKKYGTFKADVISLTKMNGSDLFYAVTNDNKAYKVTENGNK--YVLDDKLKAVKQVMFDN 571
F Y F D + + N +F+ + ++Y V E+GN YVL D + + QV N
Sbjct: 1001 FIAYIRFYVDTV-VNSENVPIVFHLMQRIKQSYDVIEDGNNYIYVLSDMAQKILQVKSQN 1059
Query: 572 F 574
F
Sbjct: 1060 F 1060
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 29.1 bits (62), Expect = 0.53
Identities = 19/78 (24%), Positives = 34/78 (43%)
Frame = +2
Query: 344 IYVASNDGIYVYKTGDKSFKKYGTFKADVISLTKMNGSDLFYAVTNDNKAYKVTENGNKY 523
++ + +DGI++ +F++ F+ + +L + G D T N T G
Sbjct: 379 LFPSGSDGIHLVVDEKSNFREEN-FQRAMSALMEKQGDDPAAMATKGNAKKGKTGKGGVK 437
Query: 524 VLDDKLKAVKQVMFDNFN 577
D K VK +M N+N
Sbjct: 438 GPSDIYKIVKMIMVKNYN 455
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 276 KSTSYTPFSLRLSLTSACIVYILPSLFSALDITKAPT 166
++T S +LS +S I + PSL S +TK+P+
Sbjct: 303 RTTEVPSISKQLSKSSTSIATVAPSLASVSSVTKSPS 339
>SPCC417.15 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 43
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 380 YIHISRHC*LRISCCHHHNINPFLC 306
+IH S HC C +H INP +C
Sbjct: 18 HIHFSHHC------CENHFINPLVC 36
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 3.7
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = -2
Query: 261 TPFSLRLSLTSACIVYILPSLFSALDITKAPTT*SSVEYSSTLRCLKTEPLSTLEAVTLS 82
TP + TS ++Y + S T TT +SV Y+ST +S+ VT +
Sbjct: 525 TPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTST 584
Query: 81 PTT 73
P T
Sbjct: 585 PVT 587
Score = 25.8 bits (54), Expect = 5.0
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = -2
Query: 261 TPFSLRLSLTSACIVYILPSLFSALDITKAPTT*SSVEYSSTLRCLKTEPLSTLEAVTLS 82
TP + TS I Y + S T TT +SV Y+ST +S+ VT +
Sbjct: 466 TPLTTTNCTTSTSIPYTSTPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTST 525
Query: 81 PTT 73
P T
Sbjct: 526 PVT 528
>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 264
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -1
Query: 241 IVNISVYCVYLAVAFLCVGYNKSAHD 164
+++IS+ C++ V F C+ YN + D
Sbjct: 112 VISISIVCIFDLVIFGCLQYNMVSMD 137
>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 303
Score = 26.2 bits (55), Expect = 3.7
Identities = 15/56 (26%), Positives = 23/56 (41%)
Frame = -2
Query: 285 FRFKSTSYTPFSLRLSLTSACIVYILPSLFSALDITKAPTT*SSVEYSSTLRCLKT 118
F+ K + L +L AC + I + + D+ K S +Y S L C T
Sbjct: 102 FKSKINASPDRPLASALAGACAITISDAFMTPFDVIKQRMQLPSRKYKSALHCATT 157
>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 807
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 236 NDNRREKGVYEVDLNLNTTVK 298
N+NR+E + VD LNTTVK
Sbjct: 614 NENRKEYVLRYVDYLLNTTVK 634
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +2
Query: 473 VTNDNKAYKVTENG--NKYVLDDKLKAVKQVMFDNFNVLHYVTLDNEV 610
V N N +K+T+ N +D+ + + +DN +V LD+E+
Sbjct: 466 VFNSNNKHKMTKQEFINLCDIDELAPEIMEYYYDNITFTPFVNLDDEL 513
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 25.4 bits (53), Expect = 6.5
Identities = 17/73 (23%), Positives = 35/73 (47%)
Frame = +2
Query: 239 DNRREKGVYEVDLNLNTTVKILDKGRDLCYDDDSTIYVASNDGIYVYKTGDKSFKKYGTF 418
D+ R + V+ + + + L++G+ +C +Y +N I + +SF G+F
Sbjct: 274 DSIRLRDVHPIRWVEDKEFQKLEEGKSVCL----RLYQRNNGSILAFPRSCRSFALDGSF 329
Query: 419 KADVISLTKMNGS 457
+D I M+G+
Sbjct: 330 HSDEIPNFTMSGA 342
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 25.0 bits (52), Expect = 8.7
Identities = 20/50 (40%), Positives = 26/50 (52%)
Frame = -2
Query: 252 SLRLSLTSACIVYILPSLFSALDITKAPTT*SSVEYSSTLRCLKTEPLST 103
SL +L S VYI +FSALD++ + S + STL KT L T
Sbjct: 716 SLARALYSNAEVYIFDDIFSALDVSTSRKIYESC-FLSTLLQHKTIILFT 764
>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
imidazole acetol phosphate transaminase
His3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 212 IYTIHADVNDNRREKGVYEVDLNLN 286
+YT+ A +ND K + E D NLN
Sbjct: 117 MYTVSAKINDVEVVKVLLEPDFNLN 141
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
Frame = +2
Query: 275 LNLNTTVKILDKGRDLCY-----DDDSTIYVASNDG 367
++L ++K+ D R + Y DD T+YV++N+G
Sbjct: 557 ISLTHSLKLTDIPRSIVYSQKYGDDGGTLYVSTNNG 592
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,472,927
Number of Sequences: 5004
Number of extensions: 49152
Number of successful extensions: 164
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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