Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c21f
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0062 - 476027-476044,476791-477195,477287-477574,477653-47...    31   0.71 
11_04_0426 - 17573681-17574010,17574163-17574282,17574382-175747...    30   1.6  
12_02_0309 - 17342900-17342904,17343860-17343887,17344003-173441...    29   2.9  
12_01_0065 - 558521-558675,558765-558835,558914-558998,559366-55...    28   5.0  
04_03_0645 + 18351034-18353299,18353707-18354203,18354633-18354680     28   5.0  
10_06_0167 + 11401984-11402023,11402024-11402293,11402499-114026...    28   6.7  
05_01_0511 + 4256220-4256828,4256920-4257175,4257247-4257309,425...    27   8.8  

>11_01_0062 -
           476027-476044,476791-477195,477287-477574,477653-477830,
           478005-478133,478531-478729,478832-478970,479130-479195,
           480459-480580,480672-480742,480819-480903,481335-481453,
           481577-481687,481945-482117,482375-482446,482768-482862,
           483361-483450,483550-483646
          Length = 818

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +2

Query: 179 VISNAEKSDGKIYTIHA--DVNDNRREKGVYEVDLNLNTTVKILDKGRDLCYDDD 337
           +IS A+  D  +Y I+   +V+D+   +G       L      +D G D+CYDDD
Sbjct: 245 IISLAQSEDSDVYDIYTVKEVDDDTTMEGTSSAPYPLLQ----VDNGDDVCYDDD 295


>11_04_0426 -
           17573681-17574010,17574163-17574282,17574382-17574754,
           17575051-17575087,17575821-17575872
          Length = 303

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 291 VVFRFKSTSYTPFSLRLSLTSACIVYILPSL 199
           +V R KS  + PFSL  SLT + +V+ L  L
Sbjct: 156 LVVRTKSVEFMPFSLSFSLTISAVVWFLYGL 186


>12_02_0309 -
           17342900-17342904,17343860-17343887,17344003-17344122,
           17344252-17344413,17344655-17344865,17344980-17345016,
           17345965-17346016
          Length = 204

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 288 VFRFKSTSYTPFSLRLSLTSACIVYILPSL 199
           V + +S  Y PFSL L+LT + +V+ L  L
Sbjct: 157 VIQSRSVEYMPFSLSLTLTLSAVVWFLYGL 186


>12_01_0065 -
           558521-558675,558765-558835,558914-558998,559366-559484,
           559570-559718,560116-560157,560413-560484,560788-560897,
           561446-561535,561633-561747
          Length = 335

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +2

Query: 179 VISNAEKSDGKIYTIHA--DVNDNRREKGVYEVDLNLNTTVKILDKGRDLCYDDD 337
           +IS A+  D  +Y I+   +V+D+   +G       L      +D   D+CYDDD
Sbjct: 225 IISLAQSEDSDVYDIYTVTEVDDDTTMEGTSSAPYPLLQ----VDNDDDVCYDDD 275


>04_03_0645 + 18351034-18353299,18353707-18354203,18354633-18354680
          Length = 936

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +2

Query: 398 FKKYGTFKADVISLTKMNGSDLFYAVTNDNKAYKVTENGNKYVLDDKLKAVKQ 556
           FK+Y    +D+ISL K+      Y   N +K  ++ E   K + D++L+  K+
Sbjct: 687 FKRYPKGFSDLISLKKIESKGFLY---NKDKDKQLLEWSTKGITDEQLQMTKE 736


>10_06_0167 +
           11401984-11402023,11402024-11402293,11402499-11402632,
           11402737-11403663
          Length = 456

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 293 VKILDKGRDLCYDDDSTIYVASNDGIYVYKTGD 391
           V ++ KG+DL YDD   + + + D    Y TGD
Sbjct: 243 VSVVTKGKDLYYDDAEILDMVTIDLSSNYLTGD 275


>05_01_0511 +
           4256220-4256828,4256920-4257175,4257247-4257309,
           4257397-4257491
          Length = 340

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +2

Query: 152 TEDQVVGAFVISNAEKSDGK-IYTIHADVNDNRREKGVYEVDLNLNTTVKILDKGRDLCY 328
           T  +V  A V   A+ +  + +YT H D +  R       V ++ +TT++ LD G ++  
Sbjct: 170 TRTRVTFAPVEQQAQAASTRDLYTRHRDQDFARAVVDCNRVIVDASTTIQRLDAGIEVPV 229

Query: 329 DDDSTIYVASNDGIY 373
           D+  T Y    D  +
Sbjct: 230 DEHLTTYTRILDSAW 244


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,720,908
Number of Sequences: 37544
Number of extensions: 272034
Number of successful extensions: 698
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)