Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10c21f
(610 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14859| Best HMM Match : SEA (HMM E-Value=0.01) 33 0.24
SB_37830| Best HMM Match : Peptidase_C54 (HMM E-Value=3.3e-11) 31 0.97
SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_46013| Best HMM Match : DUF1129 (HMM E-Value=0.23) 29 3.9
SB_33238| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_43085| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-08) 29 3.9
SB_37257| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_23808| Best HMM Match : zf-AN1 (HMM E-Value=5.5) 28 5.1
SB_8817| Best HMM Match : I-set (HMM E-Value=0) 28 5.1
SB_3066| Best HMM Match : dsrm (HMM E-Value=2.2e-32) 28 5.1
SB_20883| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_45656| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_42889| Best HMM Match : 7tm_1 (HMM E-Value=0) 27 9.0
SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_8144| Best HMM Match : VWA (HMM E-Value=3.1e-16) 27 9.0
>SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)
Length = 1776
Score = 32.7 bits (71), Expect = 0.24
Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 2/113 (1%)
Frame = +2
Query: 278 NLNTTVKILDKGRDLCYDDDSTIYVASNDGIYVYKTGD--KSFKKYGTFKADVISLTKMN 451
N N K + Y++++ +ND Y Y + K +K + + K
Sbjct: 746 NNNNKCKDTNNDNKYKYNNNNECKDTNNDNKYKYNNNNECKDTNNGNKYKYNNNNECKDT 805
Query: 452 GSDLFYAVTNDNKAYKVTENGNKYVLDDKLKAVKQVMFDNFNVLHYVTLDNEV 610
+D Y N+NK K T N NKY ++K K V+H + ++
Sbjct: 806 NNDNKYKYNNNNKC-KDTNNDNKYKHNNKYKVKNSKKMMGAGVVHPANITKDI 857
>SB_37830| Best HMM Match : Peptidase_C54 (HMM E-Value=3.3e-11)
Length = 878
Score = 30.7 bits (66), Expect = 0.97
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 271 YFVYAFFSSIIVNISVYCVYLAVAFLCVGYNKSAHD 164
Y+ Y +S ++ S + LA+ FLC GY+ S +D
Sbjct: 657 YYPYTKYSPMLSKTSAPGIILAMVFLCAGYSYSWND 692
>SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 940
Score = 29.1 bits (62), Expect = 2.9
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = -2
Query: 276 KSTSYTP---FSLRLSLTSACIVYILPSLFSALDITKAPTT*SSVEYSSTLRCLKTE 115
+ST TP F+ + TSA + ILPS A+ + KA T +E RC+K E
Sbjct: 279 RSTLRTPVRRFAQDIEETSA-LGQILPSSVDAVRLMKASTKLRDIELKDIERCIKVE 334
>SB_46013| Best HMM Match : DUF1129 (HMM E-Value=0.23)
Length = 553
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +2
Query: 200 SDGKIYTIHADVNDNRREKGVYEVDLNLNTTVKILDKGRDLCYDDDSTIYVASNDGIY 373
+D I +NDN + +Y+ D ++N ++ + D+D++IY N IY
Sbjct: 287 NDNSINDNDNSINDN--DNSIYDNDNSINDNDNSINDNDNSINDNDNSIYDNDNSSIY 342
>SB_33238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 450
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +2
Query: 179 VISNAEKSDGKIYTIHADVNDNRREKGVYEVDLNLNTTVKILDKGRDLCYDDDSTI 346
VI + D I DVND+ + E D+N + ++D+G D+ DDDS +
Sbjct: 293 VIDDDVNDDDDSDVIDDDVNDDDDSDVIDEGDVNDDDDSDVIDEG-DVIDDDDSDV 347
>SB_43085| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-08)
Length = 532
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 274 IYFVYAFFSSIIVNISVYCVYLAVAFLCVGYNKSAHDL 161
+YF+Y ++I ++S+ CV V + V +SAH +
Sbjct: 164 LYFIYVTLVAVIADLSLVCVCYTVTIISV--KRSAHSV 199
>SB_37257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 741
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = -2
Query: 279 FKSTSYTPFSLRLSLTSACIVYILPSLFSALDITKAPTT*SSVEYSSTLRCLKTE 115
F S S+TP +LS T AC +PS P++ + EY++ +RC + +
Sbjct: 613 FNSKSWTPRHSKLSSTVACEADGIPSPLIVCKADGIPSSIIACEYNN-IRCYRLQ 666
>SB_23808| Best HMM Match : zf-AN1 (HMM E-Value=5.5)
Length = 165
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 213 ILPSLFSALDITKAPTT*SSVEYSSTLRCLKTEPLSTLEA 94
ILPS A+ +TKA T +E RC++ E + EA
Sbjct: 122 ILPSSVDAVRLTKASTKLRDIELKDIERCIEVEDTAFGEA 161
>SB_8817| Best HMM Match : I-set (HMM E-Value=0)
Length = 2526
Score = 28.3 bits (60), Expect = 5.1
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +2
Query: 329 DDDSTIYVASNDGIYVYKTGDKSFKKYGTFKADVISLTKMNGSDLFYAVTND-NKAYKVT 505
+DD I +DGI V + D G +K V S + + + KA K+
Sbjct: 331 EDDRVIISEQDDGIVVLRIKDVGAHDSGVYKCQVSSDVGTSTKSFDVTIEGERRKAKKLI 390
Query: 506 ENGNKYVLDDKLKAVKQ 556
E L+ ++K VK+
Sbjct: 391 EVDETEHLEKRIKHVKE 407
>SB_3066| Best HMM Match : dsrm (HMM E-Value=2.2e-32)
Length = 429
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Frame = +2
Query: 110 NGSVFRQRSVELYSTEDQVVGAFVISNAEKSDGKIYTIH------ADVNDNRREKGVYEV 271
N S+F + LY +DQV IS + D ++++ H D + N +++G+ V
Sbjct: 363 NSSIFELKPSGLYGLKDQVEFHLYISTSPCGDARVFSPHEGDPEEIDRHANSKKRGILRV 422
Query: 272 DL 277
+
Sbjct: 423 KI 424
>SB_20883| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 672
Score = 27.9 bits (59), Expect = 6.8
Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 7/122 (5%)
Frame = +2
Query: 218 TIHADVNDNRREKGVYEVDLNLN------TTVKILDKGRDLCYDDDSTIYVASNDGIYV- 376
T + D + R EKG +V ++ T + +L+ G + + + S I V
Sbjct: 292 TNYTDTSSLRLEKGEAQVKKGVSIAGLGETELTLLEDGENAESETKESKISRSPISISVP 351
Query: 377 YKTGDKSFKKYGTFKADVISLTKMNGSDLFYAVTNDNKAYKVTENGNKYVLDDKLKAVKQ 556
K GD+ K Y +V+ N S+ Y+V N +K + E GN ++ ++ +
Sbjct: 352 VKVGDEKTKGY---VYNVLKKEISNNSESDYSVINRSKTIPLLEKGNLHITKFPKRSWRA 408
Query: 557 VM 562
+M
Sbjct: 409 IM 410
>SB_45656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 230
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +2
Query: 488 KAYKVTENGNKYVLDDKLKAVKQVMFDNFNVLHY 589
+ + + E ++YV++ L+A+ + D FN+L Y
Sbjct: 158 RQFNLDEEEDEYVVESCLQALAPTLEDTFNILSY 191
>SB_42889| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 336
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 265 VYAFFSSIIVNISVYCVYLAVAFLCVGY 182
+Y F +++ I + CVY+A L +GY
Sbjct: 179 LYKFETNLTFTIFIECVYIACPILLIGY 206
>SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1215
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +2
Query: 410 GTFKADVISLTKMNGSDLFYAVTNDNKAYKVTENGNKYVLDDKLKAVKQVMFDN 571
G K +++L K++G ++ +TNDN + + L D A+ ++ +N
Sbjct: 572 GKLKDVLVTLMKVSGEEIVKVLTNDNNDDDGDDGNDSDFLTDTFDALFAILNEN 625
>SB_8144| Best HMM Match : VWA (HMM E-Value=3.1e-16)
Length = 193
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +2
Query: 221 IHADVNDNRREKGVYEVDLNLNTTVKILDKGRDLCYDDDSTIYVASNDGIYVYKTG 388
I +D+++ RR+KG +D L K L +D + V+ +DGI G
Sbjct: 126 IKSDIDEQRRQKGYTFIDKALTLADKSLFTEEAGMREDSLKVAVSMSDGIQTKDRG 181
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,758,004
Number of Sequences: 59808
Number of extensions: 344159
Number of successful extensions: 1143
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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