Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10c21f
(610 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT030453-1|ABP87895.1| 980|Drosophila melanogaster IP18281p pro... 31 1.6
BT003468-1|AAO39471.1| 528|Drosophila melanogaster RE73615p pro... 31 1.6
AE014297-3348|AAO41595.1| 528|Drosophila melanogaster CG31145-P... 31 1.6
AE014297-3347|AAF56153.2| 528|Drosophila melanogaster CG31145-P... 31 1.6
M26400-1|AAA28907.1| 2415|Drosophila melanogaster protein ( D.me... 29 3.8
BT023889-1|ABA81823.1| 1557|Drosophila melanogaster RE03775p pro... 29 3.8
AE014296-357|AAF47569.1| 2415|Drosophila melanogaster CG1977-PA ... 29 3.8
>BT030453-1|ABP87895.1| 980|Drosophila melanogaster IP18281p protein.
Length = 980
Score = 30.7 bits (66), Expect = 1.6
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
Frame = +2
Query: 116 SVFRQRSVELYSTEDQVVGAFV--ISNAEKSDGKIYTIHADVNDNRREKGVYEVDLNLNT 289
S + S + D + G+F + N E + K++ + ++R+K +E D N
Sbjct: 770 SYYCDTSHAICGNPDMLEGSFAAFLPNFESGNRKLWRHPWRRSYHKRKKAQWETDANYCA 829
Query: 290 TVKILDKGRDLCYDDDSTIYVASNDGIYVYKTGDKSFKKYGTFK 421
V+ + YDD +Y + ++ + TG+ Y TFK
Sbjct: 830 LVRDIPP-----YDDGRRLYDLMDMAVFDFLTGNMDRHHYETFK 868
>BT003468-1|AAO39471.1| 528|Drosophila melanogaster RE73615p
protein.
Length = 528
Score = 30.7 bits (66), Expect = 1.6
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
Frame = +2
Query: 116 SVFRQRSVELYSTEDQVVGAFV--ISNAEKSDGKIYTIHADVNDNRREKGVYEVDLNLNT 289
S + S + D + G+F + N E + K++ + ++R+K +E D N
Sbjct: 318 SYYCDTSHAICGNPDMLEGSFAAFLPNFESGNRKLWRHPWRRSYHKRKKAQWETDANYCA 377
Query: 290 TVKILDKGRDLCYDDDSTIYVASNDGIYVYKTGDKSFKKYGTFK 421
V+ + YDD +Y + ++ + TG+ Y TFK
Sbjct: 378 LVRDIPP-----YDDGRRLYDLMDMAVFDFLTGNMDRHHYETFK 416
>AE014297-3348|AAO41595.1| 528|Drosophila melanogaster CG31145-PB,
isoform B protein.
Length = 528
Score = 30.7 bits (66), Expect = 1.6
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
Frame = +2
Query: 116 SVFRQRSVELYSTEDQVVGAFV--ISNAEKSDGKIYTIHADVNDNRREKGVYEVDLNLNT 289
S + S + D + G+F + N E + K++ + ++R+K +E D N
Sbjct: 318 SYYCDTSHAICGNPDMLEGSFAAFLPNFESGNRKLWRHPWRRSYHKRKKAQWETDANYCA 377
Query: 290 TVKILDKGRDLCYDDDSTIYVASNDGIYVYKTGDKSFKKYGTFK 421
V+ + YDD +Y + ++ + TG+ Y TFK
Sbjct: 378 LVRDIPP-----YDDGRRLYDLMDMAVFDFLTGNMDRHHYETFK 416
>AE014297-3347|AAF56153.2| 528|Drosophila melanogaster CG31145-PA,
isoform A protein.
Length = 528
Score = 30.7 bits (66), Expect = 1.6
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
Frame = +2
Query: 116 SVFRQRSVELYSTEDQVVGAFV--ISNAEKSDGKIYTIHADVNDNRREKGVYEVDLNLNT 289
S + S + D + G+F + N E + K++ + ++R+K +E D N
Sbjct: 318 SYYCDTSHAICGNPDMLEGSFAAFLPNFESGNRKLWRHPWRRSYHKRKKAQWETDANYCA 377
Query: 290 TVKILDKGRDLCYDDDSTIYVASNDGIYVYKTGDKSFKKYGTFK 421
V+ + YDD +Y + ++ + TG+ Y TFK
Sbjct: 378 LVRDIPP-----YDDGRRLYDLMDMAVFDFLTGNMDRHHYETFK 416
>M26400-1|AAA28907.1| 2415|Drosophila melanogaster protein (
D.melanogaster alpha-spectrin mRNA, complete cds. ).
Length = 2415
Score = 29.5 bits (63), Expect = 3.8
Identities = 22/113 (19%), Positives = 50/113 (44%), Gaps = 1/113 (0%)
Frame = +2
Query: 245 RREKGVYEVDLNLNTTVKILDKGRDLCYDDDSTIYVASNDGIY-VYKTGDKSFKKYGTFK 421
+ E V +++ NT + ++ ++ + + + + + +Y +KS ++ K
Sbjct: 934 KHEALVSDLEAFGNTIQALQEQAKNCRQQETPVVDITGKECVVALYDYTEKSPREVSMKK 993
Query: 422 ADVISLTKMNGSDLFYAVTNDNKAYKVTENGNKYVLDDKLKAVKQVMFDNFNV 580
DV++L N D + ND + + K +D L A +Q + DN ++
Sbjct: 994 GDVLTLLNSNNKDWWKVEVNDRQGFVPAAYIKK--IDAGLSASQQNLVDNHSI 1044
>BT023889-1|ABA81823.1| 1557|Drosophila melanogaster RE03775p protein.
Length = 1557
Score = 29.5 bits (63), Expect = 3.8
Identities = 22/113 (19%), Positives = 50/113 (44%), Gaps = 1/113 (0%)
Frame = +2
Query: 245 RREKGVYEVDLNLNTTVKILDKGRDLCYDDDSTIYVASNDGIY-VYKTGDKSFKKYGTFK 421
+ E V +++ NT + ++ ++ + + + + + +Y +KS ++ K
Sbjct: 934 KHEALVSDLEAFGNTIQALQEQAKNCRQQETPVVDITGKECVVALYDYTEKSPREVSMKK 993
Query: 422 ADVISLTKMNGSDLFYAVTNDNKAYKVTENGNKYVLDDKLKAVKQVMFDNFNV 580
DV++L N D + ND + + K +D L A +Q + DN ++
Sbjct: 994 GDVLTLLNSNNKDWWKVEVNDRQGFVPAAYIKK--IDAGLSASQQNLVDNHSI 1044
>AE014296-357|AAF47569.1| 2415|Drosophila melanogaster CG1977-PA
protein.
Length = 2415
Score = 29.5 bits (63), Expect = 3.8
Identities = 22/113 (19%), Positives = 50/113 (44%), Gaps = 1/113 (0%)
Frame = +2
Query: 245 RREKGVYEVDLNLNTTVKILDKGRDLCYDDDSTIYVASNDGIY-VYKTGDKSFKKYGTFK 421
+ E V +++ NT + ++ ++ + + + + + +Y +KS ++ K
Sbjct: 934 KHEALVSDLEAFGNTIQALQEQAKNCRQQETPVVDITGKECVVALYDYTEKSPREVSMKK 993
Query: 422 ADVISLTKMNGSDLFYAVTNDNKAYKVTENGNKYVLDDKLKAVKQVMFDNFNV 580
DV++L N D + ND + + K +D L A +Q + DN ++
Sbjct: 994 GDVLTLLNSNNKDWWKVEVNDRQGFVPAAYIKK--IDAGLSASQQNLVDNHSI 1044
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,053,079
Number of Sequences: 53049
Number of extensions: 475277
Number of successful extensions: 1410
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1408
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2503659279
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -