Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c21f
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024746-13|AAF60407.2|  480|Caenorhabditis elegans Hypothetical...    31   0.64 
Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z74041-1|CAA98520.1|  255|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AF101318-2|AAK68599.1|  331|Caenorhabditis elegans Seven tm rece...    28   4.5  
Z92786-3|CAB63202.1|  488|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z83216-11|CAB05679.2|  404|Caenorhabditis elegans Hypothetical p...    28   6.0  
Z81491-10|CAB04023.3|  282|Caenorhabditis elegans Hypothetical p...    28   6.0  
U55364-14|AAA97979.1|  210|Caenorhabditis elegans Hypothetical p...    28   6.0  
Z79756-11|CAB02119.2|  614|Caenorhabditis elegans Hypothetical p...    27   7.9  
Z68302-3|CAA92630.1|  184|Caenorhabditis elegans Hypothetical pr...    27   7.9  
M55535-1|AAA28103.1|  187|Caenorhabditis elegans ras protein pro...    27   7.9  

>AC024746-13|AAF60407.2|  480|Caenorhabditis elegans Hypothetical
           protein Y110A2AL.12a protein.
          Length = 480

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 20/70 (28%), Positives = 37/70 (52%)
 Frame = -2

Query: 549 TAFNLSSKTYLLPFSVTL*ALLSFVTA*NKSLPFIFVRLITSALKVPYFLKLLSPVLYTY 370
           T    + +   L F +T+  L  F+   N +LP+IF+       +  Y+LK ++ V++  
Sbjct: 18  TLTGCAQRELFLTFLITMLGL--FIR--NLTLPWIFLGRRYDTGRFTYWLKFVADVIFLC 73

Query: 369 IPSLLATYIV 340
           +PSLLA  ++
Sbjct: 74  VPSLLAMTVL 83


>Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical
           protein F33E2.6 protein.
          Length = 846

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = -2

Query: 180 TKAPTT*SSVEYSSTLRCLKTEPLSTLEAVTLSPTTKM 67
           T+APTT + +  +     L+TE L T ++ T++P TK+
Sbjct: 798 TEAPTTEAPMTITPRTEQLRTEQLRTDQSKTVTPKTKI 835


>Z74041-1|CAA98520.1|  255|Caenorhabditis elegans Hypothetical
           protein T03F7.5 protein.
          Length = 255

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -1

Query: 475 YGVKQIASVHFC*AYNVSFESTIFFKAF-ISGFIYIYPVIASYVYRAVII 329
           + ++++ S+ F        + T+FFK F ++GF++      SYVY  VI+
Sbjct: 54  FTIERVLSIQFS-----KIQRTLFFKLFFLAGFVFENGFAISYVYTNVIL 98


>AF101318-2|AAK68599.1|  331|Caenorhabditis elegans Seven tm
           receptor protein 66 protein.
          Length = 331

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = -1

Query: 532 IQNVFVTIFSDFVSFIVVCYGVKQIASVHFC*AYNVSFES--TIFFKAFISGFIYIYPVI 359
           I N F+T++S    F +  +      SV F   Y   F+S  T FF+ F  G   +YP++
Sbjct: 86  ISNAFITVWS---CFYLTTFS---FISVLFIYRYLCLFDSSKTRFFEGFKGGLWMLYPLL 139

Query: 358 ASYVYRAVI 332
               Y + I
Sbjct: 140 PGICYASTI 148


>Z92786-3|CAB63202.1|  488|Caenorhabditis elegans Hypothetical
           protein F47H4.6 protein.
          Length = 488

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/58 (29%), Positives = 31/58 (53%)
 Frame = +2

Query: 107 LNGSVFRQRSVELYSTEDQVVGAFVISNAEKSDGKIYTIHADVNDNRREKGVYEVDLN 280
           L G  FR+ S  L + + +V+   V++++ +S+G  + +H    D  RE  V+E   N
Sbjct: 338 LEGFTFREVSEVLRNCKPRVLNMIVLNSSTESNGIEHLVHL---DQWREARVFESSRN 392


>Z83216-11|CAB05679.2|  404|Caenorhabditis elegans Hypothetical
           protein C08F11.13 protein.
          Length = 404

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +2

Query: 77  VGLSVTASKVLNGSVFRQRSVELYSTEDQVVGAFVISNAEKSDGKIYTIHA 229
           VG     +K  N +++    +++ ST   V+GAF+ S   K+ G+++ I A
Sbjct: 175 VGSHRWMNKYSNSTIWISIILQIASTFTLVIGAFIRSEDPKTSGRMFFIGA 225


>Z81491-10|CAB04023.3|  282|Caenorhabditis elegans Hypothetical
           protein D1086.6 protein.
          Length = 282

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 24/84 (28%), Positives = 35/84 (41%)
 Frame = -2

Query: 279 FKSTSYTPFSLRLSLTSACIVYILPSLFSALDITKAPTT*SSVEYSSTLRCLKTEPLSTL 100
           F+ + YTP     ++TS  +V    S  S    T  P+T +++  SST     T   +  
Sbjct: 122 FQCSKYTPAP---TVTSTTVVDTSES--STSQSTTTPSTTTTIIVSSTTTTNPTTSTTPT 176

Query: 99  EAVTLSPTTKMRRVAAFILDIQFP 28
              T +PTT     A    DI  P
Sbjct: 177 TPTTTTPTTSTTTTARGTTDIPAP 200


>U55364-14|AAA97979.1|  210|Caenorhabditis elegans Hypothetical
           protein F21C10.1 protein.
          Length = 210

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +2

Query: 467 YAVTNDNKAYKVTENGN--KYVLDDKLKAVKQVMFDN 571
           ++ + + K Y +T   N   Y++D K + + +V+FDN
Sbjct: 60  FSYSEETKMYVITSPDNPLNYIIDSKSEELNKVIFDN 96


>Z79756-11|CAB02119.2|  614|Caenorhabditis elegans Hypothetical
           protein F53C11.6 protein.
          Length = 614

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 610 YFIIQSDIVQYIEVIKHNLFDGFQFIIQNVFVTIFSDFV 494
           Y  + S I+ ++E    N+ DGF F++ +V    F D V
Sbjct: 255 YIGLSSWIISWVE--NWNMMDGFYFVMMSVLTIGFGDLV 291


>Z68302-3|CAA92630.1|  184|Caenorhabditis elegans Hypothetical
           protein ZK792.6 protein.
          Length = 184

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/48 (22%), Positives = 24/48 (50%)
 Frame = +2

Query: 377 YKTGDKSFKKYGTFKADVISLTKMNGSDLFYAVTNDNKAYKVTENGNK 520
           ++T  ++ K YG    D  + T+M   + FY +  + + ++   + NK
Sbjct: 127 FRTVSETAKGYGIPNVDTSAKTRMGVDEAFYTLVREIRKHRERHDNNK 174


>M55535-1|AAA28103.1|  187|Caenorhabditis elegans ras protein
           protein.
          Length = 187

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/48 (22%), Positives = 24/48 (50%)
 Frame = +2

Query: 377 YKTGDKSFKKYGTFKADVISLTKMNGSDLFYAVTNDNKAYKVTENGNK 520
           ++T  ++ K YG    D  + T+M   + FY +  + + ++   + NK
Sbjct: 130 FRTVSETAKGYGIPNVDTSAKTRMGVDEAFYTLVREIRKHRERHDNNK 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,376,714
Number of Sequences: 27780
Number of extensions: 264897
Number of successful extensions: 870
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)