Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c21f
         (610 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59260.1 68418.m07426 lectin protein kinase, putative similar...    31   0.45 
At5g23660.1 68418.m02774 nodulin MtN3 family protein similar to ...    31   0.60 
At3g48740.1 68416.m05322 nodulin MtN3 family protein similar to ...    30   1.4  
At1g78580.1 68414.m09158 alpha, alpha-trehalose-phosphate syntha...    30   1.4  
At3g29080.1 68416.m03641 hypothetical protein                          29   3.2  
At3g24535.1 68416.m03081 expressed protein ; expression supporte...    28   4.2  
At1g74700.1 68414.m08652 RNase Z identical to RNase Z (GI:209756...    28   4.2  
At1g53430.1 68414.m06056 leucine-rich repeat family protein / pr...    27   9.7  

>At5g59260.1 68418.m07426 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains protein kinase domain,
           Pfam:PF00069; contains legume lectins alpha and beta
           domains, Pfam:PF00138 and Pfam:PF00139
          Length = 674

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
 Frame = +2

Query: 77  VGLSVTASKVLNGSVFRQRSVELYSTEDQVVG---AFVISNAE--KSDGKIYT---IHAD 232
           + +  TAS + + S   +    ++  +    G   AFV+S  +  +S+G   +   I   
Sbjct: 70  IPIKFTASSLSSFSFSTEFVFAIFPLQKSTYGHGMAFVVSPTKDLRSNGSANSNLGIFNR 129

Query: 233 VNDNRREKGVYEVDLNLNTTVKILDK-GRDLCYDDDSTIYVASNDGIY 373
            NDN+    ++ V+L+ N   +  DK G D+  D +S + V S D  Y
Sbjct: 130 ANDNKTATHIFAVELDTNQNSESFDKGGNDVGIDINSIVSVESADASY 177


>At5g23660.1 68418.m02774 nodulin MtN3 family protein similar to
           MtN3 GI:1619602 (root nodule development) from [Medicago
           truncatula]
          Length = 285

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -2

Query: 288 VFRFKSTSYTPFSLRLSLTSACIVYILPSL 199
           V + KS  Y PFSL L+LT + ++++L  L
Sbjct: 157 VIKTKSVEYMPFSLSLTLTISAVIWLLYGL 186


>At3g48740.1 68416.m05322 nodulin MtN3 family protein similar to
           MtN3 GI:1619602 (root nodule development) from [Medicago
           truncatula]
          Length = 289

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 288 VFRFKSTSYTPFSLRLSLTSACIVYILPSL 199
           V + +S  Y PFSL L+LT + ++++L  L
Sbjct: 157 VIKTRSVEYMPFSLSLTLTISAVIWLLYGL 186


>At1g78580.1 68414.m09158 alpha, alpha-trehalose-phosphate synthase,
           UDP-forming, putative / trehalose-6-phosphate synthase,
           putative / UDP-glucose-glucosephosphate
           glucosyltransferase, putative similar to
           trehalose-6-phosphate synthase SL-TPS/P [Selaginella
           lepidophylla] GI:4100325; contains Pfam profiles
           PF00982: Glycosyltransferase family 20, PF02358:
           Trehalose-phosphatase
          Length = 942

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 23/63 (36%), Positives = 31/63 (49%)
 Frame = +2

Query: 236 NDNRREKGVYEVDLNLNTTVKILDKGRDLCYDDDSTIYVASNDGIYVYKTGDKSFKKYGT 415
           N  RR   + E+DLNL+  +K   K   LC D  +TI V S     V    DK+F +Y  
Sbjct: 606 NQGRRGDQIKEMDLNLHPELKGPLKA--LCSDPSTTIVVLSGSSRSVL---DKNFGEYDM 660

Query: 416 FKA 424
           + A
Sbjct: 661 WLA 663


>At3g29080.1 68416.m03641 hypothetical protein
          Length = 445

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = -2

Query: 249 LRLSLTSACIVYILPSLFSALDITKAPTT*SSVEYSSTLRCLKTEPLSTLEAVT-LSPTT 73
           +++S T +CIV ++P      D+ +  T     E   + RC+ T  +   EA T   PTT
Sbjct: 300 VKVSATLSCIVAVIP------DLEEFETASGQTEIGVSTRCISTSVVVGSEATTNTEPTT 353

Query: 72  KMRRVAA 52
              R  A
Sbjct: 354 TGSRTRA 360


>At3g24535.1 68416.m03081 expressed protein ; expression supported
           by MPSS
          Length = 188

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 8/35 (22%), Positives = 21/35 (60%)
 Frame = -1

Query: 595 SDIVQYIEVIKHNLFDGFQFIIQNVFVTIFSDFVS 491
           SD+++++       +  +  +++N F+ ++SDF S
Sbjct: 125 SDVIEFLHCYSRLRYTAYLDVVENFFMEVYSDFFS 159


>At1g74700.1 68414.m08652 RNase Z identical to RNase Z (GI:20975609)
           [Arabidopsis thaliana]
          Length = 280

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 26/125 (20%), Positives = 54/125 (43%), Gaps = 4/125 (3%)
 Frame = +2

Query: 212 IYTIHADVNDNRREKGVYEVDLNLNTTVKILDKGRDLCYDDDSTIYVASNDGIYVYKTGD 391
           ++ +H  ++ +  +  +  +D+     ++     +DL      T +V  + G  VY T  
Sbjct: 93  LFEVHRKLDSSELKHNLVGLDIGEEFIIR-----KDLKVKAFKTFHVIQSQGYVVYSTKY 147

Query: 392 KSFKKYGTFKADVISLTKMNGSDLFYAVTNDNKAYKVTENGNKYVLD----DKLKAVKQV 559
           K  K+Y     + I   K++G ++  ++     A+   +  + +V+D    D LKA   V
Sbjct: 148 KLKKEYIGLSGNEIKNLKVSGVEITDSIITPEVAF-TGDTTSDFVVDETNADALKAKVLV 206

Query: 560 MFDNF 574
           M   F
Sbjct: 207 MESTF 211


>At1g53430.1 68414.m06056 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1030

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +2

Query: 275 LNLNTTVKILDKGRDLCYDDDSTIYVASNDGIYVYKTGDKSFKKYGTFKADVIS 436
           L+L+   KI D G     DD++T       G   Y   + + + Y T KADV S
Sbjct: 795 LDLSLNAKISDFGLAKLNDDENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYS 848


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,452,639
Number of Sequences: 28952
Number of extensions: 238508
Number of successful extensions: 706
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)