Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c20f
         (610 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20418| Best HMM Match : Dynein_heavy (HMM E-Value=0)                29   2.9  
SB_6643| Best HMM Match : Antimicrobial_8 (HMM E-Value=0.27)           29   3.9  
SB_32575| Best HMM Match : SNF7 (HMM E-Value=1.1)                      28   6.8  
SB_43060| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_20418| Best HMM Match : Dynein_heavy (HMM E-Value=0)
          Length = 670

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = +2

Query: 209 QHRGQQGLLHKHESLRKFHDDVQGRIPSQEFGILDLLRKNEGRSHRAVQAVLLCQRF*MF 388
           Q  G  G + + E + K   D+QG++PS    + D+ R  +  S     AV+L Q    F
Sbjct: 208 QTAGDSGGISREEFITKIASDIQGKLPS----LFDVDRVRKNLSEITPTAVVLLQELDRF 263

Query: 389 LQNSMLRQ 412
             N ++R+
Sbjct: 264 --NVLIRR 269


>SB_6643| Best HMM Match : Antimicrobial_8 (HMM E-Value=0.27)
          Length = 251

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 269 DVQGRIPSQEFGILDLLR-KNEGRSHRAVQAVLLCQRF*MFLQNSMLRQSL 418
           D  G + S    I  + R K+ GR+HRA   VL+ Q   M ++  ++ QSL
Sbjct: 192 DFFGGVVSDSDRISRITRIKHHGRAHRAGDEVLVLQMMVMSIKMKLINQSL 242


>SB_32575| Best HMM Match : SNF7 (HMM E-Value=1.1)
          Length = 579

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 531 NMEVKNKMDYVKMMDGCLDEKI 596
           N+E KN +D VK + GCLD  +
Sbjct: 328 NVEFKNALDGVKSVIGCLDRTV 349


>SB_43060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
 Frame = +3

Query: 120 VEKQKKILSLFYNVNEISYEAEYYKVAQDFNIEASKDCYTNMKAYENFMMMYKVGFLPKN 299
           +E++ ++L   Y ++E++ E    ++ Q  N+      Y N+    +  +    G    +
Sbjct: 13  LEEELQLLEAIY-IHELTIEGPRERLEQTQNLNQLTK-YPNV--LPSIEIKNARGLSEAH 68

Query: 300 LE-FSIFYEKMREEAIALFKLFYYAKDFECFYKTACY 407
           +E  S+   ++ E  I    LF   +D  CF KT CY
Sbjct: 69  IESISLNLHELAETRIGSPMLFELIEDSHCFTKTECY 105


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,388,072
Number of Sequences: 59808
Number of extensions: 336618
Number of successful extensions: 701
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)