Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c19f
         (596 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08)                  38   0.005
SB_21941| Best HMM Match : Kinesin (HMM E-Value=0)                     31   0.71 
SB_21384| Best HMM Match : 7tm_1 (HMM E-Value=8.6e-05)                 30   1.6  
SB_14744| Best HMM Match : 7tm_1 (HMM E-Value=4e-11)                   29   2.9  
SB_4060| Best HMM Match : zf-CCHC (HMM E-Value=3.6)                    29   3.8  
SB_154| Best HMM Match : RVT_1 (HMM E-Value=0.00044)                   29   3.8  
SB_28082| Best HMM Match : A2M_comp (HMM E-Value=0)                    28   5.0  
SB_35427| Best HMM Match : A2M_comp (HMM E-Value=4.6e-05)              28   5.0  
SB_51570| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_36217| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_7193| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.7  
SB_48642| Best HMM Match : EFG_IV (HMM E-Value=7.1)                    27   8.7  

>SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08)
          Length = 418

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 35/105 (33%), Positives = 46/105 (43%), Gaps = 7/105 (6%)
 Frame = +2

Query: 113 GTCPELKPVNNFNLTAYQGIWYEI-SKFPNES--EKNGKCSSAEYKLEGD----VVKVKN 271
           G C  +  V   N+T+Y G WY++ S F  E   E+N  C +A+Y L  D    VV    
Sbjct: 233 GPCQGIDTVPTLNVTSYLGRWYQMYSDFIVEETFERNAVCVTADYTLRKDGKIGVVNSNR 292

Query: 272 VHIIDGVKKYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQVL 406
               DG  K I G A    D     KL V   F  +  +GS  +L
Sbjct: 293 DKKPDGELKQITGYA-YQPDPEVPGKLKV--HFDTVPVEGSYWIL 334


>SB_21941| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 791

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 20/110 (18%), Positives = 42/110 (38%)
 Frame = +2

Query: 197 NESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTDDANKAAKLTVTFKFGE 376
           N  +  G+  + EY L    +++ N  I D + K      ++ +  +K   +        
Sbjct: 397 NSMQGKGRRRNREYLLHVSYLEIYNEEIRDLLVKNTRSNLEIKEHPDKGMYVKGLSSITV 456

Query: 377 ISRDGSVQVLATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAK 526
              +   ++L     N ++   C   D  +SH +F+  L  N    G+ +
Sbjct: 457 DCYEDMAEILEIGSANRSVGSTCMNTDSSRSHSIFIIDLQVNVNKGGEGE 506


>SB_21384| Best HMM Match : 7tm_1 (HMM E-Value=8.6e-05)
          Length = 442

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 189 NFPTNLRRTANALQLNTNWKVTW*RSRTCISSTASRSI*KGR 314
           NF T      +AL++   W VTW R   C  +T S  +  GR
Sbjct: 33  NFLTLFVFATDALRIRRFWGVTWWRDTRCSRATTSNCLKTGR 74


>SB_14744| Best HMM Match : 7tm_1 (HMM E-Value=4e-11)
          Length = 372

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 571 VYLFGVFLDEIIDSSFSVAFKLLVSRED 488
           VY+F  FLDE +     +A KLLV  E+
Sbjct: 137 VYVFAKFLDERLKRKIQIATKLLVKHEN 164


>SB_4060| Best HMM Match : zf-CCHC (HMM E-Value=3.6)
          Length = 395

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
 Frame = +2

Query: 311 TAKLTDDANKAAKLTVTFK--FGEISRDGSV-QVLATDYNNYAIAYNCKYDDKKKSHQVF 481
           T ++T+  +      + FK    EIS+ G+V +V+ATD  +  I  + K +  +  HQ  
Sbjct: 129 TVQVTEAGSSNGMERLGFKNCMDEISKSGNVVKVVATD-RHVGIRSDLKKNHPECQHQFD 187

Query: 482 VWILSRN--KKLEGDAKTAVDNFIKEHSKEIDS 574
           VW ++++  KKL   AK    N +    K + +
Sbjct: 188 VWHMAKSVTKKLTEAAKKKDTNDLLPWIKSVSN 220


>SB_154| Best HMM Match : RVT_1 (HMM E-Value=0.00044)
          Length = 1170

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -2

Query: 580 FRRVYLFGVFLDEIIDSSFSVAFKLLVSREDPDEHLMRLFLV 455
           F+R+ + GVF +E++ S       ++V  E  DEHL RL +V
Sbjct: 807 FQRL-MQGVFREELLQSMMVYLDDIIVFAESIDEHLRRLEVV 847


>SB_28082| Best HMM Match : A2M_comp (HMM E-Value=0)
          Length = 1013

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 368 FGEISRDGSVQVLATDYNNYAIAYNCKYDDKKKSHQVFVWILSR 499
           FGE  ++GS+ + A    ++A A    Y D+K   Q   W++S+
Sbjct: 504 FGERDKEGSMWLTAFVVKSFAQARKYIYIDEKALDQSIFWMVSK 547


>SB_35427| Best HMM Match : A2M_comp (HMM E-Value=4.6e-05)
          Length = 264

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 368 FGEISRDGSVQVLATDYNNYAIAYNCKYDDKKKSHQVFVWILSR 499
           FGE  ++GS+ + A    ++A A    Y D+K   Q   W++S+
Sbjct: 202 FGERDKEGSMWLTAFVVKSFAQARKYIYIDEKALDQSIFWMVSK 245


>SB_51570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1950

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
 Frame = +2

Query: 125 ELKPVNNFN-LTAYQGIWYEISKFPNESEKNGKCSSAEYKLE-GDVVKVKNV--HIIDGV 292
           ++ P+N  + + AY  I Y+I K  ++ E +GK   +  ++  G++ K  +    +I+  
Sbjct: 592 KVTPLNKVDEIAAYHNICYDIGK--SKGECDGKMVESLDRIPYGEMPKWGSTARFLINAK 649

Query: 293 KKYIEGTAKLTDDANKAAKLTVTF--KF------GEISRDGSVQVLATDYNNYAIAYNCK 448
           +K   G  K  +  ++  K+   F  KF      G +S D  V + +   NNY +  +  
Sbjct: 650 RKLGLGVKKPKNGKSRRVKICSGFAIKFKSPKESGRLSDDQQVMLQSNKDNNYKVMASND 709

Query: 449 YDD 457
           YD+
Sbjct: 710 YDE 712


>SB_36217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1356

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -2

Query: 580 FRRVYLFGVFLDEIIDSSFSVAFKLLVSREDPDEHLMRLFLV 455
           F+R+ + GVF  E++ S       ++V  E  DEHL RL +V
Sbjct: 562 FQRL-MQGVFRKELLQSMMVYLDDIIVFAESIDEHLRRLEVV 602


>SB_7193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 372

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 571 VYLFGVFLDEIIDSSFSVAFKLLVSRED 488
           VY+F  FLD+ +     +A KLLV  E+
Sbjct: 137 VYVFAKFLDKRLKRKIQIATKLLVKHEN 164


>SB_48642| Best HMM Match : EFG_IV (HMM E-Value=7.1)
          Length = 508

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 179 EISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVK 295
           E+ ++  ESE+NGK SS    +  + V +K + + DG K
Sbjct: 38  EVFEWRFESEENGKMSSV-MTIHSNTVPLKEIGLWDGAK 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,285,735
Number of Sequences: 59808
Number of extensions: 316883
Number of successful extensions: 1057
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)