Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10c19f
(596 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58070.1 68418.m07267 lipocalin, putative similar to temperat... 57 1e-08
At4g18760.1 68417.m02772 leucine-rich repeat family protein cont... 35 0.047
At5g37190.1 68418.m04465 COP1-interacting protein 4 (CIP4) simil... 31 0.44
At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1) i... 31 0.77
At5g14890.1 68418.m01746 NHL repeat-containing protein contains ... 29 1.8
At1g08550.1 68414.m00948 violaxanthin de-epoxidase precursor, pu... 29 1.8
At5g64816.2 68418.m08154 expressed protein 29 3.1
At5g64816.1 68418.m08153 expressed protein 29 3.1
At4g37890.2 68417.m05359 zinc finger (C3HC4-type RING finger) fa... 29 3.1
At4g37890.1 68417.m05358 zinc finger (C3HC4-type RING finger) fa... 29 3.1
At2g27110.2 68415.m03258 far-red impaired responsive protein, pu... 29 3.1
At2g27110.1 68415.m03257 far-red impaired responsive protein, pu... 29 3.1
At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative s... 28 4.1
At5g36740.1 68418.m04402 PHD finger family protein 28 4.1
At5g36670.1 68418.m04388 PHD finger family protein 28 4.1
At5g17000.1 68418.m01991 NADP-dependent oxidoreductase, putative... 28 4.1
At1g76750.1 68414.m08932 hypothetical protein 28 4.1
At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing ... 27 7.2
At2g29070.2 68415.m03533 ubiquitin fusion degradation UFD1 famil... 27 7.2
At2g29070.1 68415.m03534 ubiquitin fusion degradation UFD1 famil... 27 7.2
>At5g58070.1 68418.m07267 lipocalin, putative similar to temperature
stress-induced lipocalin [Triticum aestivum] GI:18650668
Length = 186
Score = 56.8 bits (131), Expect = 1e-08
Identities = 43/146 (29%), Positives = 71/146 (48%), Gaps = 3/146 (2%)
Frame = +2
Query: 125 ELKPVNNFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKLEGD-VVKVKNVHIIDGVKK 298
E++ V N+ Y G WYEI+ FP+ + KNG + A Y L D + V N +G +
Sbjct: 6 EMEVVKGLNVERYMGRWYEIASFPSRFQPKNGVDTRATYTLNPDGTIHVLNETWSNGKRG 65
Query: 299 YIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATDYNNYAIAYNCKYDDKKKSHQV 478
+IEG+A D + AKL V F + + DY I + ++ + +
Sbjct: 66 FIEGSAYKADPKSDEAKLKVKFYVPPFL---PIIPVTGDYWVLYIDPDYQHALIGQPSRS 122
Query: 479 FVWILSRNKKLEGDA-KTAVDNFIKE 553
++WILSR ++E + K V+ ++E
Sbjct: 123 YLWILSRTAQMEEETYKQLVEKAVEE 148
>At4g18760.1 68417.m02772 leucine-rich repeat family protein
contains leucine rich-repeat domains Pfam:PF00560,
INTERPRO:IPR001611
Length = 431
Score = 34.7 bits (76), Expect = 0.047
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Frame = +3
Query: 312 RPSSPTTPIKPQS*QSLLSLEKYHAMDQFKSWRLTIITTPSLTTANT------MTRKSLI 473
+PSS ++P+ P+ ++L SL D T T+ S+ T +T +T S
Sbjct: 40 KPSSSSSPLDPKQLKALESLNIPTVKDPCNHRPTTKSTSSSVVTCDTSSPFRLVTSISFT 99
Query: 474 KCSSGSSLETRSLKATLKLLSIISSRNTP 560
CS+ S+ T +L+A L+ +S N P
Sbjct: 100 NCSTDLSISTTALRALSPSLTSLSFLNCP 128
>At5g37190.1 68418.m04465 COP1-interacting protein 4 (CIP4) similar
to COP1-interacting protein 4 (CIP4) [Arabidopsis
thaliana] GI:13160646; supporting cDNA
gi|13160645|dbj|AB036832.1|;
Length = 876
Score = 31.5 bits (68), Expect = 0.44
Identities = 21/75 (28%), Positives = 36/75 (48%)
Frame = +2
Query: 206 EKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTDDANKAAKLTVTFKFGEISR 385
EK+GK SS K + + V+ ++D +++ E L K++K T K ++
Sbjct: 515 EKSGKKSSKRSKKKDSLNIVEEAQVVDSLQQKKEAEENLEKSGKKSSKKTK--KKDSLNI 572
Query: 386 DGSVQVLATDYNNYA 430
QVL+ + NN A
Sbjct: 573 VEEAQVLSVEVNNVA 587
>At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1)
identical to cDNA CIP4.1 mRNA for COP1-interacting
protein 4.1, GI:13160649
Length = 976
Score = 30.7 bits (66), Expect = 0.77
Identities = 26/130 (20%), Positives = 57/130 (43%)
Frame = +2
Query: 206 EKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTDDANKAAKLTVTFKFGEISR 385
EK+GK SS K + + V+ ++D +++ E L K++K + K ++
Sbjct: 665 EKSGKKSSKRSKKKDSLNIVEEAQVVDSLQQKKEAEENLEKSGKKSSKRSK--KKDSLNI 722
Query: 386 DGSVQVLATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAKTAVDNFIKEHSKE 565
QVL+ + NN A ++ K + +F + K ++ + +++++
Sbjct: 723 VEEAQVLSVEVNNVAQEEASPINNPKDTDALFTPAKKNTESNASPLKKIIE--VTDNTED 780
Query: 566 IDSSKLVHTD 595
I+ S V +
Sbjct: 781 INRSMQVQKE 790
>At5g14890.1 68418.m01746 NHL repeat-containing protein contains
Pfam profile PF01436: NHL repeat
Length = 754
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 405 WRLTIITTPSLTTANTMTRKSLIKCSSGSSLET 503
W L TT + TT + ++ +S++K SG ++ET
Sbjct: 50 WSLQTSTTTTTTTKSGVSSRSMVKYESGYNMET 82
>At1g08550.1 68414.m00948 violaxanthin de-epoxidase precursor,
putative (AVDE1) similar to EST gb|N37612
Length = 462
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +2
Query: 137 VNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNV 274
V NFN++ + G WY I+ N + C E+ EGD V N+
Sbjct: 204 VQNFNISDFNGKWY-ITSGLNPTFDAFDCQLHEFHTEGDNKLVGNI 248
>At5g64816.2 68418.m08154 expressed protein
Length = 130
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 494 RGSRRTLDETFSCHRICSCKR 432
RG ++ DE F C R+C+ KR
Sbjct: 38 RGREKSSDEIFVCERVCTSKR 58
>At5g64816.1 68418.m08153 expressed protein
Length = 130
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 494 RGSRRTLDETFSCHRICSCKR 432
RG ++ DE F C R+C+ KR
Sbjct: 38 RGREKSSDEIFVCERVCTSKR 58
>At4g37890.2 68417.m05359 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 711
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +3
Query: 399 KSWRLTIITTPSLTTANTMTRKSLIKC-SSGSSLETRSLKATLKLLSIISSRNTP 560
+SW T I+TPS ++ ++C +SG TR+ ++ L LS+ SS +TP
Sbjct: 64 QSWSATAISTPS----PSLPASPKLQCDTSGDVTPTRN-RSPLSFLSVSSSSSTP 113
>At4g37890.1 68417.m05358 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 739
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +3
Query: 399 KSWRLTIITTPSLTTANTMTRKSLIKC-SSGSSLETRSLKATLKLLSIISSRNTP 560
+SW T I+TPS ++ ++C +SG TR+ ++ L LS+ SS +TP
Sbjct: 64 QSWSATAISTPS----PSLPASPKLQCDTSGDVTPTRN-RSPLSFLSVSSSSSTP 113
>At2g27110.2 68415.m03258 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
Length = 851
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 506 KLEGDAKTAVDNFIKEHSKEIDSSKLVH 589
+L+G K V F+KEH+ + SS ++H
Sbjct: 115 ELQGHEKWVVTKFVKEHTHGLASSNMLH 142
>At2g27110.1 68415.m03257 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
Length = 851
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 506 KLEGDAKTAVDNFIKEHSKEIDSSKLVH 589
+L+G K V F+KEH+ + SS ++H
Sbjct: 115 ELQGHEKWVVTKFVKEHTHGLASSNMLH 142
>At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative
similar to SP|P04051 DNA-directed RNA polymerase III
largest subunit (EC 2.7.7.6) {Saccharomyces cerevisiae};
contains InterPro accession IPR000722: RNA polymerase,
alpha subunit
Length = 1328
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 299 YIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATDYNNYAIA 436
Y + ++ KA F G ++DG +L DYN++A A
Sbjct: 609 YFRNSELISGQLGKATLALDIFPLGNGNKDGLYSILLRDYNSHAAA 654
>At5g36740.1 68418.m04402 PHD finger family protein
Length = 1179
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 221 CSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTD 328
C Y EGD + N+ ++DG + E T KLTD
Sbjct: 1020 CLKLTYVEEGDNDRESNLKLLDGSVEEKEDTKKLTD 1055
>At5g36670.1 68418.m04388 PHD finger family protein
Length = 1193
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 221 CSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTD 328
C Y EGD + N+ ++DG + E T KLTD
Sbjct: 1034 CLKLTYVEEGDNDRESNLKLLDGSVEEKEDTKKLTD 1069
>At5g17000.1 68418.m01991 NADP-dependent oxidoreductase, putative
strong similarity to probable NADP-dependent
oxidoreductase (zeta-crystallin homolog) P1
[SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
Arabidopsis thaliana
Length = 345
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Frame = +2
Query: 182 ISKFPNESEKNGKCSSAEYKLEG--DVVKVKNVHI 280
+S FP ES+ + K ++ E+KL G + V VKN+++
Sbjct: 14 VSGFPKESDFDFKTTTVEFKLPGGSNSVLVKNLYL 48
>At1g76750.1 68414.m08932 hypothetical protein
Length = 158
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 417 IITTPSLTTANTMTRKSLIKCSSGSSLETRSLKATLKL 530
I+T + ++T+T + L+K S G+S T SL LKL
Sbjct: 13 IVTLMLMVASSTVTARPLMKPSMGTSSPTTSLVYRLKL 50
>At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 979
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 494 SRNKKLEGDAKTAVDNFIKEHSKE 565
+R +K EG+ TA I+EHSK+
Sbjct: 548 NRKRKAEGECSTAETESIEEHSKD 571
>At2g29070.2 68415.m03533 ubiquitin fusion degradation UFD1 family
protein similar to SP|P70362 Ubiquitin fusion
degradation protein 1 homolog (UB fusion protein 1) {Mus
musculus}; contains Pfam profile PF03152: Ubiquitin
fusion degradation protein UFD1
Length = 312
Score = 27.5 bits (58), Expect = 7.2
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +2
Query: 245 EGDVVKVKNVHIIDGVK-KYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATDYN 421
EGDV++VKN+ ++ G K T D +N A L T + G + YN
Sbjct: 91 EGDVMQVKNISLVKGTYIKLQPHTQDFLDISNPKAILETTLRSYSCLTTG--DTIMVPYN 148
Query: 422 N 424
N
Sbjct: 149 N 149
>At2g29070.1 68415.m03534 ubiquitin fusion degradation UFD1 family
protein similar to SP|P70362 Ubiquitin fusion
degradation protein 1 homolog (UB fusion protein 1) {Mus
musculus}; contains Pfam profile PF03152: Ubiquitin
fusion degradation protein UFD1
Length = 280
Score = 27.5 bits (58), Expect = 7.2
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +2
Query: 245 EGDVVKVKNVHIIDGVK-KYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATDYN 421
EGDV++VKN+ ++ G K T D +N A L T + G + YN
Sbjct: 59 EGDVMQVKNISLVKGTYIKLQPHTQDFLDISNPKAILETTLRSYSCLTTG--DTIMVPYN 116
Query: 422 N 424
N
Sbjct: 117 N 117
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,572,588
Number of Sequences: 28952
Number of extensions: 218917
Number of successful extensions: 699
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -