Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c18f
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...   232   2e-62
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...   231   4e-62
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    28   0.89 
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    28   1.2  
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|...    28   1.2  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    27   2.1  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    27   2.1  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    26   3.6  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    26   4.8  
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    26   4.8  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    25   6.3  
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo...    25   8.3  

>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  232 bits (568), Expect = 2e-62
 Identities = 117/190 (61%), Positives = 138/190 (72%)
 Frame = +1

Query: 25  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 204
           MGI+RD  HKR ATG KRA  RKKRK+ELGR  +NTR+GP+RIH VR RGGN K+RALRL
Sbjct: 1   MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRL 60

Query: 205 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 384
           D+GNFSWGSE  ++KTRII V Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY + 
Sbjct: 61  DSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGIL 120

Query: 385 LGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPG 564
           +G  KG K T          +S+   RK+ AR   +KV+ ALE QF  GRL A V+SRPG
Sbjct: 121 MG-SKGKKATSTP-----NPKSKHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSRPG 174

Query: 565 QCGRADGYIL 594
           Q GR DGYIL
Sbjct: 175 QSGRCDGYIL 184


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  231 bits (566), Expect = 4e-62
 Identities = 117/190 (61%), Positives = 138/190 (72%)
 Frame = +1

Query: 25  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 204
           MGI+RD  HKR ATG KRA  RKKRK+ELGR  +NTR+GP+RIH VR RGGN K+RALRL
Sbjct: 1   MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRL 60

Query: 205 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 384
           D+GNFSWGSE  ++KTRII V Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY + 
Sbjct: 61  DSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGIL 120

Query: 385 LGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPG 564
           +G  KG K T          +S+   RK+ AR   +KV+ ALE QF  GRL A V+SRPG
Sbjct: 121 MG-SKGKKATATP-----TPKSKHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSRPG 174

Query: 565 QCGRADGYIL 594
           Q GR DGYIL
Sbjct: 175 QSGRCDGYIL 184


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
 Frame = +1

Query: 37   RDHWHKRRATGGKRAPIRKKRKY--ELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDT 210
            RD  +K +  G       K+ +   EL    +N  +  Q+   + S    T YRA+ LDT
Sbjct: 1083 RDRLYKSQLIGRVLDDTTKENRLLKELASSKSNITIRWQQGGLIGSGSFGTVYRAVNLDT 1142

Query: 211  GNFSWGSECSTRKTRI 258
            G+     E +  K RI
Sbjct: 1143 GDLMAVKEVALHKPRI 1158


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 26/83 (31%), Positives = 39/83 (46%)
 Frame = +1

Query: 118 PAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 297
           P  NT + PQ     RSR   T  R+L   +G  S  S  ++ +TR    V +AS+N L+
Sbjct: 530 PLQNTVISPQPTR--RSR---TPIRSL---SGRSSVASSRNSSRTRSYSNVSSASSNSLI 581

Query: 298 RTKTLVKNAIVVVDATPFRQWYE 366
              +   ++  V   TPF   +E
Sbjct: 582 SIISSKPSSSTVQRQTPFHSPFE 604


>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +1

Query: 40  DHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALR 201
           + W K   T  K+    +KRK  L R A   RL  + + S+ S+GG    +A +
Sbjct: 32  EKWSKGVKTN-KKEQEAEKRKAALERKAERERLEKEEMESLPSKGGKGSKKAAK 84


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/73 (21%), Positives = 33/73 (45%)
 Frame = +1

Query: 340 ATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQ 519
           +TP     + H       KKG+K+  A++    ++R  + AR+  A +   K   ++E+ 
Sbjct: 754 STPDTTGSDIHIVSEKRGKKGSKVITAKKVSAKERREARRARRQTALEESLKAPISIEDA 813

Query: 520 FHTGRLLACVASR 558
                +LA +  +
Sbjct: 814 TDPQTILAILKQK 826


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 5/88 (5%)
 Frame = +1

Query: 40   DHWHKRRATGGKRAPIRKKRKY-----ELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 204
            D W   +A G   +PIR+ ++Y     +  +PA   R      H    R    K R + +
Sbjct: 758  DEWKASKAFGANDSPIRENKRYKHNKLQTPKPADKFR---DNYHKQNKRNREAKERGIGI 814

Query: 205  DTGNFSWGSECSTRKTRIIDVVYNASNN 288
               N    S    RK R +     A NN
Sbjct: 815  KV-NSELKSAVEIRKARELKEKRLAKNN 841


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +1

Query: 223 WGSEC--STRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRK 396
           WGS+     +K  + +V+  +++ +  +T  L         AT F  + +S+Y +PL R+
Sbjct: 250 WGSQSYLQEKKAGLAEVLNISTSQQKPKTTALDYEVFRHEMATKFSSFADSYYPVPLDRE 309

Query: 397 K 399
           +
Sbjct: 310 Q 310


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 13  DPTKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAAN 129
           + TK G  +     RRA     A  RKK K + GRP +N
Sbjct: 3   ETTKSGSKKSGQTSRRAIHSCLACRRKKLKCDHGRPCSN 41


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 362 YHCLNGVASTTTIAFLTRVFVRTNS 288
           ++C N V S T +  +  VFVR NS
Sbjct: 518 FYCSNEVLSLTALLSVPNVFVRPNS 542


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 284 LDALYTTSMIRVLRVEHSDPQEKLPVSRR 198
           L+ + T S  +V R  H DP  KLP  RR
Sbjct: 193 LEGVKTKSGRKVHRPNHFDPLVKLPTRRR 221


>SPAC25H1.06 |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 588 VTIGATTLTWATRHASQ-QTPCVELLF*STLNLSKTLPCQ 472
           +T+G T+L+W+ RH+ +  + C E  +    N +K  P +
Sbjct: 329 LTLGGTSLSWSWRHSGRIVSACQEYCY--VWNFNKANPLE 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,456,055
Number of Sequences: 5004
Number of extensions: 48073
Number of successful extensions: 149
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)