Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c18f
         (594 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) riboso...   248   2e-66
At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ri...   244   3e-65
At2g47990.1 68415.m06006 transducin family protein / WD-40 repea...    31   0.58 
At3g28560.1 68416.m03566 hypothetical protein similar to mitocho...    30   1.3  
At1g73260.1 68414.m08478 trypsin and protease inhibitor family p...    29   2.3  
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ...    29   3.1  
At5g41820.1 68418.m05092 geranylgeranyl transferase alpha subuni...    28   5.4  
At5g05240.1 68418.m00560 expressed protein similar to unknown pr...    27   9.4  
At2g02950.1 68415.m00242 phytochrome kinase substrate 1 (PKS1) i...    27   9.4  

>At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) ribosomal
           protein S8 - Zea mays, PIR:T04088
          Length = 222

 Score =  248 bits (607), Expect = 2e-66
 Identities = 126/201 (62%), Positives = 150/201 (74%), Gaps = 11/201 (5%)
 Frame = +1

Query: 25  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALR 201
           MGISRD  HKRRATGGK+   RKKRKYE+GR  ANT+L   + +  +R RGGN K+RALR
Sbjct: 1   MGISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 202 LDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTL 381
           LDTGN+SWGSE +TRKTR++DVVYNASNNELVRTKTLVK+AIV VDA PF+QWY SHY +
Sbjct: 61  LDTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGV 120

Query: 382 PLGR-KKGAKLT-----EAEEAII----NKKRSQKTARKYLARQRLAKVEGALEEQFHTG 531
            LGR KK A  T     E EEA +      K+S    RK  +RQ    ++  +E+QF +G
Sbjct: 121 ELGRKKKSASSTKKDGEEGEEAAVAAPEEVKKSNHLLRKIASRQEGRSLDSHIEDQFASG 180

Query: 532 RLLACVASRPGQCGRADGYIL 594
           RLLAC++SRPGQCGRADGYIL
Sbjct: 181 RLLACISSRPGQCGRADGYIL 201


>At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S
           ribosomal protein S8, Prunus armeniaca, EMBL:AF071889
          Length = 210

 Score =  244 bits (598), Expect = 3e-65
 Identities = 123/191 (64%), Positives = 141/191 (73%), Gaps = 1/191 (0%)
 Frame = +1

Query: 25  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALR 201
           MGISRD  HKRRATGGK+   RKKRKYELGR  ANT+L   + +  +R RGGN K+RALR
Sbjct: 1   MGISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 202 LDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTL 381
           LDTGNFSWGSE  TRKTRI+DV YNASNNELVRT+TLVK+AIV VDA PF+Q Y  HY +
Sbjct: 61  LDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGV 120

Query: 382 PLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRP 561
            +GRKK  +    EE     K+S    RK   RQ    ++  LEEQF +GRLLAC+ASRP
Sbjct: 121 DIGRKKKGEAVTTEEV----KKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLLACIASRP 176

Query: 562 GQCGRADGYIL 594
           GQCGRADGYIL
Sbjct: 177 GQCGRADGYIL 187


>At2g47990.1 68415.m06006 transducin family protein / WD-40 repeat
           family protein similar to Vegetatible incompatibility
           protein HET-E-1 (SP:Q00808) {Podospora anserina};
           contains 5 WD-40 repeats (PF00400); similar to  beta
           transducin-like protein HET-E2C*4
           (GP:17225206)[Podospora anserina]
          Length = 530

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +1

Query: 394 KKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVAS-RPGQC 570
           KKG KLT  ++ ++ K R ++     L  ++ A V   +EE     +L+ CV++   G+ 
Sbjct: 393 KKGLKLTRHDK-LLKKFRHKEALVSVLEEKKPANVVAVMEELVARRKLMKCVSNMEEGEL 451

Query: 571 GRADGYI 591
           G   G++
Sbjct: 452 GMLLGFL 458


>At3g28560.1 68416.m03566 hypothetical protein similar to
           mitochondrial protein-like protein (GI:11559424)
           [Cucumis sativus]
          Length = 257

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +1

Query: 4   FFFDPTKMGISRDHWHKRRATGGK--RAPIRKKRKYELGRPAANTRLGPQR 150
           F  DP K    ++ W KRR   G+  R   R K++ +LGR     R+  +R
Sbjct: 206 FAMDPEKNKAEKEAWKKRRRKRGRLLRKKRRTKQRRKLGRRRRKQRMQRRR 256


>At1g73260.1 68414.m08478 trypsin and protease inhibitor family
           protein / Kunitz family protein similar to trypsin
           inhibitor propeptide [Brassica oleracea] GI:841208;
           contains Pfam profile PF00197: Trypsin and protease
           inhibitor
          Length = 215

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 292 LVRTKTLVKNAI-VVVDATPFRQWYESHYTLPLGRKKGAKLTEA 420
           L  T  L  NA   VVD      ++ES+Y LP+ R +G  LT A
Sbjct: 16  LALTAVLASNAYGAVVDIDGNAMFHESYYVLPVIRGRGGGLTLA 59


>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
           repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
           sapiens}; similar to WD repeat protein Srw1
           -Schizosaccharomyces pombe,PID:d1023012
          Length = 475

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +1

Query: 172 GGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVV 333
           GG T  R +R      +    C    +++ ++V++ + NELV T    +N I+V
Sbjct: 353 GGGTADRCIRFWNTTTNTHLNCVDTNSQVCNLVWSKNVNELVSTHGYSQNQIIV 406


>At5g41820.1 68418.m05092 geranylgeranyl transferase alpha
           subunit-related / RAB geranylgeranyltransferase alpha
           subunit-related low similarity to SP|Q08602 [Rattus
           norvegicus]
          Length = 687

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -2

Query: 302 VRTNSLLDALYTTSMIRVLRVEHSDPQEKLPVSRRSARYLVFPP 171
           +R+ S LD+L     +RVL V H+    +LPV   + RYL   P
Sbjct: 580 IRSFSALDSLRHLKQLRVLDVSHNHICGELPVD--TTRYLCSSP 621


>At5g05240.1 68418.m00560 expressed protein similar to unknown
           protein (gb AAD32815.2)
          Length = 530

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 367 SHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEE 516
           SH  +P  +K+G K     +A + KKR  +   +     RLA   G L E
Sbjct: 190 SHGGIPAPKKRGRKTKINNDAAVAKKRKIERKEEVDRFARLAAPSGLLNE 239


>At2g02950.1 68415.m00242 phytochrome kinase substrate 1 (PKS1)
           identical to Swiss-Prot:Q9SWI1 phytochrome kinase
           substrate 1 [Arabidopsis thaliana]
          Length = 439

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 79  APIRKKRKYELGRPAANTRLGPQRIHSVRSRGGN 180
           +P+R+ R  ++ R     +  PQR  S  S GGN
Sbjct: 339 SPVRRNRPTQIPRIPITAKSAPQRRKSSSSSGGN 372


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,242,483
Number of Sequences: 28952
Number of extensions: 267901
Number of successful extensions: 782
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)