Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10c17r
(768 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 30 0.42
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 29 0.73
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.97
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c... 27 2.2
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 27 3.0
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M... 27 3.9
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo... 26 5.2
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 26 5.2
SPAC3H5.04 |aar2||U5 snRNP-associated protein Aar2|Schizosacchar... 26 5.2
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 5.2
SPAC25B8.15c |||wybutosine biosynthesis protein Tyw3|Schizosacch... 26 5.2
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.2
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb... 26 6.8
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 25 9.0
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 29.9 bits (64), Expect = 0.42
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -1
Query: 729 ISTSMPSTLSTSVKKNSRALLT--VTRSVNHVLTTSRSL*QSILNLMLPLTPSS 574
++ +PS++++S K NSR+ L+ + ++++L + S S L + LP P S
Sbjct: 249 LAAVLPSSITSSAKSNSRSSLSQKIRNYISNMLFDAISYTDSCLAIHLPFIPES 302
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 29.1 bits (62), Expect = 0.73
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 274 VFVYPYEPTPKESEPFKSVVPDNKPFGYP 188
+ VY + P +SE F +VV DN YP
Sbjct: 4194 ILVYQHLPDSSQSETFLNVVTDNSAVDYP 4222
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 28.7 bits (61), Expect = 0.97
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = -1
Query: 726 STSMPSTLSTSVKKNSRALLTVTRSVNHVLTTSRSL 619
STS PS++S+S+ +S L + T S + ++ +S S+
Sbjct: 607 STSSPSSISSSISSSSTILSSPTPSTSSLMISSSSI 642
Score = 26.2 bits (55), Expect = 5.2
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = -1
Query: 738 ILTISTSMPSTLSTSVKKNSRALLTVTRSVNHVLTTSRSL*QSILNLMLPLTPSS 574
IL+ STS PS+ S S+ +S + + S + + S S+ S L P TPS+
Sbjct: 579 ILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSP-TPST 632
>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 581
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = -3
Query: 577 VKMFLGPKYDENGFPFSLEDNWMNFY----ELDWFVQKVNPGQSQI 452
+++FL P +G + +D W++FY E DW N G + +
Sbjct: 338 LRIFLFPAVLYSGLQWGAQDAWLSFYLTTEEEDWMEAPYNYGDNAV 383
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 27.1 bits (57), Expect = 3.0
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Frame = -3
Query: 487 FVQKVNPGQSQITRSSTDFAFFKEDSLPMAEIYK--LLDQGKIPTDMFNSSDTMPSRLML 314
F+ VNP ++ TR + ++SLPMA Y L + + + P +
Sbjct: 258 FISSVNPLEADDTRETLSEGALVQESLPMAYSYSDTNLVVSRDSFTLTGDDNLFPEGGLR 317
Query: 313 PKGTYDG 293
P T DG
Sbjct: 318 PANTIDG 324
>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 342
Score = 26.6 bits (56), Expect = 3.9
Identities = 9/34 (26%), Positives = 15/34 (44%)
Frame = -3
Query: 493 DWFVQKVNPGQSQITRSSTDFAFFKEDSLPMAEI 392
DW + K+ P ++T D FF + P +
Sbjct: 82 DWVIVKLGPSSGRVTGCEIDTTFFNGNHAPEVSV 115
>SPAC3A12.17c |cys12|cys1b|cysteine synthase
Cys12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 395
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Frame = +2
Query: 272 YKQLEGESIVCTLRQHQPRRHSVR------GVEHVSRNLSLVQELVDFGHR 406
+K L G R+ RRH V G+ ++RN S+ + L+D +R
Sbjct: 261 HKVLHGVMFDLAEREGTRRRHQVDTIVEGVGINRMTRNFSIAEPLIDMAYR 311
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 5.2
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +3
Query: 186 NG*PNGLLSGTTDLNGSDSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELNMSVG 365
+G + L + + N +++ G+Y N NS N + S SL+G+ S LN S G
Sbjct: 550 SGMASSFLGSSGNNNNNNNSNSGNYN--NNNSGNNNQQHQQSSS-SLQGLASSFLNSSSG 606
>SPAC3H5.04 |aar2||U5 snRNP-associated protein
Aar2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 346
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 634 HKPFTVTIDIKSDVATNAVVKMFLGPKYDENGFPFSLEDNW 512
H+ +ID S T ++ K L YDEN +PF +W
Sbjct: 58 HEDMKYSIDFDSKSETASLQK--LDVLYDENFYPFESTKDW 96
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 26.2 bits (55), Expect = 5.2
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 8/43 (18%)
Frame = -3
Query: 661 YKVRQPRLNHKP--FTVTIDIKSDVATNAV---VKM---FLGP 557
Y+V++PRLN +P +T ++++ +A+N V VK+ FLGP
Sbjct: 554 YEVQRPRLNDRPPLYTARDEMETLLASNKVTDWVKLSEFFLGP 596
>SPAC25B8.15c |||wybutosine biosynthesis protein
Tyw3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 237
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 235 EPFKSVVPDNKPFGYPFDRPVLP 167
E KS VPD P G+P D P+ P
Sbjct: 19 EGLKSSVPDASPKGHP-DSPIFP 40
>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -3
Query: 763 TSKSTKWSHLDHFDFDAFNTVYFSKEELKSSPHGYKVRQPRLNHKPF 623
TS+ W + DFD F+ +Y ++ + P Y + R + KP+
Sbjct: 343 TSQKPDWHYKMGMDFDLFHRLYLARLPI---PINYSSLRSRSSSKPY 386
>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 6.8
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Frame = +3
Query: 372 PWSKSL*ISAIGKE-----SSLKNAKSVDERVI*DWPGLTFCTNQSSS*KFIQLSSRLKG 536
PWS++ S G +S+K+A + + I + L N + KF KG
Sbjct: 5 PWSRNFLCSCRGFSVCTPYASIKSASELALKNISELQALQKIQNHTEKLKFFSSKLHNKG 64
Query: 537 KPFSSYLG 560
+PF+ LG
Sbjct: 65 EPFTLQLG 72
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 25.4 bits (53), Expect = 9.0
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -1
Query: 738 ILTISTSMPSTLSTSV-KKNSRALLTVTRSVNHVLTTSRS 622
I + +P T+ V KKN+ + S NHV T SRS
Sbjct: 473 IKKLQNQVPETIKDEVGKKNTAFSPGTSLSTNHVKTKSRS 512
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,949,817
Number of Sequences: 5004
Number of extensions: 62744
Number of successful extensions: 202
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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