Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10c17r
(768 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31) 33 0.19
SB_42303| Best HMM Match : RVT_1 (HMM E-Value=0.00019) 31 1.4
SB_13178| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_34358| Best HMM Match : DUF1280 (HMM E-Value=7) 30 2.4
SB_17431| Best HMM Match : RVT_1 (HMM E-Value=1.8e-25) 30 2.4
SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_1509| Best HMM Match : SRR (HMM E-Value=0.22) 29 5.5
SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
Length = 690
Score = 33.5 bits (73), Expect = 0.19
Identities = 21/71 (29%), Positives = 38/71 (53%)
Frame = -3
Query: 586 NAVVKMFLGPKYDENGFPFSLEDNWMNFYELDWFVQKVNPGQSQITRSSTDFAFFKEDSL 407
N V ++ PK ++ P S+ D WM+ +E FV+K+N Q+ + SS F K+ +
Sbjct: 248 NESVLVWRAPKSSQDALPVSITDRWMSQHE---FVEKLNM-QAVLCASSHTDEFVKDFLI 303
Query: 406 PMAEIYKLLDQ 374
+ +I L+ +
Sbjct: 304 TLEKIPVLIHE 314
>SB_42303| Best HMM Match : RVT_1 (HMM E-Value=0.00019)
Length = 736
Score = 30.7 bits (66), Expect = 1.4
Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Frame = -3
Query: 499 ELDWFVQKVNPGQSQIT---RSSTDFAFFKEDSLPMA--EIYKL-LDQGKIPTDMFNSSD 338
E WF Q +N +S + R +T F D +P+ +I + +D+ +IPTD++ SS
Sbjct: 404 EGQWFRQLINESESITSLCERINTFFCSLTSDFVPLTTDDILGIPVDESEIPTDLYVSSR 463
Query: 337 ----TMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVV 215
+ S + G DG P + + + +E P +E + +++
Sbjct: 464 EAGIALQSIKLRKAGGPDGIP-NIILKTFSFELAPVIAEIYNALL 507
>SB_13178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = -3
Query: 346 SSDTMPSRLMLPKGTYDGFPFQLFV--FVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPV 173
+++T P+ +++P GT ++ + PY P P + P S GYP P
Sbjct: 93 NTETSPNAVIIPPGTDPQLANLVYPPPSMAPYPPGPNQGTPPPSTQQQPGSGGYPMMYPQ 152
Query: 172 LPQYF 158
P Y+
Sbjct: 153 QPGYY 157
>SB_34358| Best HMM Match : DUF1280 (HMM E-Value=7)
Length = 359
Score = 29.9 bits (64), Expect = 2.4
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Frame = -3
Query: 499 ELDWFVQKVNPGQSQIT---RSSTDFAFFKEDSLPMA--EIYKL-LDQGKIPTDMFNSSD 338
E WF Q +N +S + R +T F D +P+ +I + +D+ +IPTD++ SS
Sbjct: 255 EGQWFRQLINESESITSLCERINTFFCSLTSDFVPLTTDDILGIPVDESEIPTDLYVSSR 314
Query: 337 ----TMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKS 221
+ S + G DG P + + + +E P +E + +
Sbjct: 315 EAGIALQSIKLRKAGGPDGIP-NIILKTFSFELAPVIAEIYNA 356
>SB_17431| Best HMM Match : RVT_1 (HMM E-Value=1.8e-25)
Length = 867
Score = 29.9 bits (64), Expect = 2.4
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Frame = -3
Query: 499 ELDWFVQKVNPGQSQIT---RSSTDFAFFKEDSLPMA--EIYKL-LDQGKIPTDMFNSSD 338
E WF Q +N +S + R +T F D +P+ +I + +D+ +IPTD++ SS
Sbjct: 490 EGQWFRQLINESESITSLCERINTFFCSLTSDFVPLTTDDILGIPVDESEIPTDLYVSSR 549
Query: 337 ----TMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKS 221
+ S + G DG P + + + +E P +E + +
Sbjct: 550 EAGIALQSIKLRKAGGPDGIP-NIILKTFSFELAPVIAEIYNA 591
>SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -3
Query: 331 PSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYP 188
PS ++ P+ Y G+PFQ YP P P F + P + P YP
Sbjct: 169 PSPVLSPQ-VYRGYPFQ-----YPGTPPPPMYPAFPPIFPSSPPPEYP 210
>SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)
Length = 644
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/69 (26%), Positives = 38/69 (55%)
Frame = -1
Query: 216 FRTTNHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIR 37
+ T + V+++++ + + S N S + +T+ +NYS + +LT + +NY+ L
Sbjct: 76 YLTLSIKVLNTLSKNYSTLSKNYLTLSIKVLNTLSKNYSTLSKNYLT---LSKNYSTL-- 130
Query: 36 KSKRTLTIT 10
SK LT++
Sbjct: 131 -SKNYLTLS 138
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/54 (22%), Positives = 34/54 (62%)
Frame = -1
Query: 216 FRTTNHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRN 55
+ T + ++++++ +L+ S L + ++ ST+++NYS + +LT+ +I ++
Sbjct: 155 YLTLSIKLLNTLSKNYLTLSIKLLNTLSKNSSTLRKNYSTLSRNYLTLRRIPQH 208
>SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1894
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -3
Query: 262 PYEPTPKESEPFKSVVPDNKPFGYPFDRPVLPQYFKQPNMFFKKV 128
P+ P + +PF+SV P +PF Q +QP+ F+ V
Sbjct: 509 PFRPGQQPQQPFRSVQPPQQPFRADQQTQQPFQSGQQPHQPFRSV 553
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,789,601
Number of Sequences: 59808
Number of extensions: 442334
Number of successful extensions: 1266
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1264
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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