Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10c17r
(768 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g02190.2 68414.m00150 CER1 protein, putative similar to CER1 ... 31 0.85
At1g02190.1 68414.m00149 CER1 protein, putative similar to CER1 ... 31 0.85
At3g13530.1 68416.m01701 MAP3K epsilon protein kinase identical ... 31 1.1
At3g03480.1 68416.m00346 transferase family protein similar to h... 31 1.1
At5g49060.1 68418.m06070 DNAJ heat shock N-terminal domain-conta... 30 2.0
At2g17250.1 68415.m01992 expressed protein weak similarity to Ri... 30 2.0
At1g10760.1 68414.m01231 starch excess protein (SEX1) identical ... 29 3.4
At4g13390.1 68417.m02092 proline-rich extensin-like family prote... 29 4.5
At5g14580.1 68418.m01710 polyribonucleotide nucleotidyltransfera... 28 6.0
At5g06630.1 68418.m00749 proline-rich extensin-like family prote... 28 6.0
At4g18030.1 68417.m02684 dehydration-responsive family protein s... 28 7.9
At3g47420.1 68416.m05156 glycerol-3-phosphate transporter, putat... 28 7.9
At3g28550.1 68416.m03565 proline-rich extensin-like family prote... 28 7.9
At3g07980.1 68416.m00975 protein kinase, putative similar to MAP... 28 7.9
At1g23720.1 68414.m02994 proline-rich extensin-like family prote... 28 7.9
>At1g02190.2 68414.m00150 CER1 protein, putative similar to CER1
GI:1199467 and maize gl1 homolog (glossy1 locus)
GI:1209703 from [Arabidopsis thaliana]
Length = 623
Score = 31.1 bits (67), Expect = 0.85
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -1
Query: 207 TNHSVIHSIAPFFLSTSNNLTCS-SRRSWSTMKENYSPIYLTFLTIH 70
TN+S+ I F T++NLT S RS +E+ I+LT LT H
Sbjct: 257 TNYSLFMPIYDFIYGTTDNLTDSLYERSLEIEEESPDVIHLTHLTTH 303
>At1g02190.1 68414.m00149 CER1 protein, putative similar to CER1
GI:1199467 and maize gl1 homolog (glossy1 locus)
GI:1209703 from [Arabidopsis thaliana]
Length = 627
Score = 31.1 bits (67), Expect = 0.85
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -1
Query: 207 TNHSVIHSIAPFFLSTSNNLTCS-SRRSWSTMKENYSPIYLTFLTIH 70
TN+S+ I F T++NLT S RS +E+ I+LT LT H
Sbjct: 257 TNYSLFMPIYDFIYGTTDNLTDSLYERSLEIEEESPDVIHLTHLTTH 303
>At3g13530.1 68416.m01701 MAP3K epsilon protein kinase identical to
MAP3K epsilon protein kinase [Arabidopsis thaliana]
gi|3549652|emb|CAA12272
Length = 1368
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 237 DSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELN 353
D +G G+YG N +V + +SLE IV E+LN
Sbjct: 24 DEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIVQEDLN 62
>At3g03480.1 68416.m00346 transferase family protein similar to
hypersensitivity-related gene GB:CAA64636 [Nicotiana
tabacum]; contains Pfam transferase family domain
PF00248
Length = 454
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Frame = -3
Query: 334 MPSRLMLPKGTYDGFPFQLF----VFVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVLP 167
M ++ LP+ T G F++ V P +PTP+E +P S + D + G F PV+
Sbjct: 1 MDHQVSLPQSTTTGLSFKVHRQQRELVTPAKPTPRELKPL-SDIDDQQ--GLRFQIPVI- 56
Query: 166 QYFKQPNM 143
+F +PN+
Sbjct: 57 -FFYRPNL 63
>At5g49060.1 68418.m06070 DNAJ heat shock N-terminal
domain-containing protein low similarity to SP|Q9QYI4
DnaJ homolog subfamily B member 12 {Mus musculus};
contains Pfam profile PF00226: DnaJ domain
Length = 354
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -3
Query: 733 DHFD-FDAFNTVYFSKEELKSSPHGYKVRQPRLNHKPFTVTIDIKSDVATNAVVKMFL 563
D FD + F TV+ + E+ + H Y+ RQPR + + + S + ++ FL
Sbjct: 191 DEFDPEEIFRTVFGQQREVFRASHAYRTRQPRNQFREEEINVAGPSCLTIIQILPFFL 248
>At2g17250.1 68415.m01992 expressed protein weak similarity to
Ribosome biogenesis protein MAK21 (Swiss-Prot:Q12176)
[Saccharomyces cerevisiae]
Length = 577
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -1
Query: 717 MPSTLSTSVKKNSRALLTVTRSVNHVLTTSRSL*QSILNLMLPLTPSS 574
M S LS KKN + L +S+ H L TSRS ++ L+ ++P S
Sbjct: 1 MASILSKKQKKNEKYTLKELKSLGHDLLTSRSHINNLPLLLTFVSPES 48
>At1g10760.1 68414.m01231 starch excess protein (SEX1) identical to
SEX1 [Arabidopsis thaliana] GI:12044358; supporting cDNA
gi|12044357|gb|AF312027.1|AF312027
Length = 1399
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +3
Query: 216 TTDLNGSDSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELNMSV 362
T+DL G+ S +G Y SW G P+ V L E ++SE+ N +V
Sbjct: 1089 TSDLVGAKSRNIG-YLKGKVPSWVGIPTSVALPFGVFEKVISEKANQAV 1136
>At4g13390.1 68417.m02092 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 429
Score = 28.7 bits (61), Expect = 4.5
Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 1/98 (1%)
Frame = -3
Query: 364 PTDMFNSSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYPF 185
P ++NS P P Y P +VY P P PF V + P Y +
Sbjct: 342 PPYVYNSPPPPPYYSPSPTVNYKSPPPP---YVYNSPPPPPYYSPFPKVEYKSPPPPYIY 398
Query: 184 DRPVLPQYFK-QPNMFFKKVLVYHEGELFPYLFNIPHY 74
+ P P Y+ P + +K PY++ P+Y
Sbjct: 399 NSPPPPPYYSPSPKITYKSPPP-------PYIYKTPYY 429
>At5g14580.1 68418.m01710 polyribonucleotide nucleotidyltransferase,
putative similar to Swiss-Prot:P05055 polyribonucleotide
nucleotidyltransferase (EC 2.7.7.8) (Polynucleotide
phosphorylase) (PNPase) [Escherichia coli]
Length = 991
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -1
Query: 192 IHSIAPFFLSTSNNLTCSSRRSWSTMKENYS 100
+ S++P ST++NL S+ STMKEN S
Sbjct: 877 LKSVSPKNNSTASNLVSFSKAKKSTMKENLS 907
>At5g06630.1 68418.m00749 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 440
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -3
Query: 271 FVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVLPQYFKQPNMFFK 134
+VY P P S P V + P Y + P P Y PN+++K
Sbjct: 308 YVYSSPPPPYYS-PSPKVYYKSPPPPYVYSSPPPPYYSPSPNVYYK 352
>At4g18030.1 68417.m02684 dehydration-responsive family protein
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 621
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = -3
Query: 268 VYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVLPQYFKQPNMFFKKVLVYHEGE 107
+Y P ++E + +VP K + PF P Y N FK + V G+
Sbjct: 113 IYRERHCPPDNEKLRCLVPAPKGYMTPFPWPKSRDYVHYANAPFKSLTVEKAGQ 166
>At3g47420.1 68416.m05156 glycerol-3-phosphate transporter, putative
/ glycerol 3-phosphate permease, putative similar to
cAMP inducible 2 protein [Mus musculus] GI:4580997,
glycerol-3-phosphate transporter (glycerol 3-phosphate
permease) [Homo sapiens] GI:7543982; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 523
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = -1
Query: 747 NGHILTISTSMPSTLST--SVKKNSRALLTVTRSVN 646
NG I+T++ + L T S+K NSRAL TVT ++
Sbjct: 412 NGPYALITTAVSADLGTHSSLKGNSRALATVTAIID 447
>At3g28550.1 68416.m03565 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1018
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -3
Query: 271 FVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVLPQYFKQPNMFFK 134
+VY P P S P VV + P Y + P P Y P +++K
Sbjct: 567 YVYSSPPPPYYS-PSPKVVYKSPPPPYVYSSPPPPYYSPSPKVYYK 611
>At3g07980.1 68416.m00975 protein kinase, putative similar to MAP3K
epsilon protein kinase [Arabidopsis thaliana]
gi|3549652|emb|CAA12272
Length = 1367
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 237 DSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELN 353
D +G G+YG N +V + +SLE I E+LN
Sbjct: 24 DEIGKGAYGRVYIGLDLENGDFVAIKQVSLENIGQEDLN 62
>At1g23720.1 68414.m02994 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 895
Score = 27.9 bits (59), Expect = 7.9
Identities = 22/77 (28%), Positives = 27/77 (35%)
Frame = -3
Query: 364 PTDMFNSSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYPF 185
P SS P PK TY P +VY P P P V + P Y +
Sbjct: 710 PPPYVYSSPPPPYYSPSPKPTYKSPPPP---YVYSSPPPPPYYSPSPKVEYKSPPPPYVY 766
Query: 184 DRPVLPQYFKQPNMFFK 134
P P Y P + +K
Sbjct: 767 SSPPPPYYSPSPKVEYK 783
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,149,722
Number of Sequences: 28952
Number of extensions: 319655
Number of successful extensions: 1205
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -