Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10c15f
(589 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0) 46 2e-05
SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0) 45 4e-05
SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0) 45 5e-05
SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45) 44 1e-04
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0) 41 7e-04
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0) 41 9e-04
SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0) 40 0.002
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0) 39 0.003
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0) 37 0.014
SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22) 36 0.019
SB_22047| Best HMM Match : Mito_carr (HMM E-Value=0) 36 0.019
SB_29345| Best HMM Match : Mito_carr (HMM E-Value=0) 36 0.019
SB_52314| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.043
SB_5442| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.057
SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0) 33 0.23
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 33 0.23
SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42) 33 0.23
SB_21044| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 31 0.53
SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0) 31 0.70
SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44) 31 0.92
SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.92
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0) 31 0.92
SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_45992| Best HMM Match : HCO3_cotransp (HMM E-Value=0) 29 2.8
SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34) 29 3.7
SB_6907| Best HMM Match : PAN (HMM E-Value=0.019) 28 4.9
SB_6551| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 4.9
SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0) 28 4.9
SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29) 28 6.5
SB_54436| Best HMM Match : PH (HMM E-Value=0.18) 27 8.6
SB_33309| Best HMM Match : zf-C2H2 (HMM E-Value=0) 27 8.6
>SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 328
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/76 (30%), Positives = 38/76 (50%)
Frame = +3
Query: 252 MTAGAIAGVMEHCIMYPLDSVKTRMQSLRTAHNSTISETFRYMVQREGLLRPIRGMSAVV 431
+ +GAIAG+ P D +KTR Q+ + + R +V+ EG G A++
Sbjct: 241 LVSGAIAGMAYWTAGLPADVLKTRYQTAPPGRYGRVLDVLRTLVRYEGFTALYTGFGAIL 300
Query: 432 LGAGPAHACFFATYEH 479
+ A P +A FF Y++
Sbjct: 301 IRALPVNAAFFLAYDY 316
Score = 40.7 bits (91), Expect = 9e-04
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 6/118 (5%)
Frame = +3
Query: 252 MTAGAIAGVMEHCIMYPLDSVKTRMQSLRTAHNSTIS---ETFRYMVQREGLLRPIRGMS 422
+ AG IAGV ++ PLD VK +Q + S+ + R + + G+ +G+S
Sbjct: 141 LAAGMIAGVATSFVLTPLDRVKCILQIEKAFGGSSYGGPVDCLRRIYREAGVRGVYKGIS 200
Query: 423 AVVLGAGPAHACFFATYEHCKLTLSQMTRHRHDHITHG---LSGCLASLIHDAVSNPA 587
+ P F T E C ++ H HI G +SG +A + + PA
Sbjct: 201 VTAMRDIPGWGAMFFTNELCHRAITGEKNHLTRHIGPGGVLVSGAIAGMAYWTAGLPA 258
Score = 33.5 bits (73), Expect = 0.13
Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Frame = +3
Query: 222 TLPTQNFVTHMTAGAIAGVMEHCIMYPLDSVKTRMQSLRTAH------NSTISETFRYMV 383
T P + + + AG+ AG + + +PLD++K R+Q++ + F ++
Sbjct: 32 TRPKFSVLKNSIAGSAAGAAANLVGFPLDTIKVRLQAMPLPKPGEPWMYKNSFDCFFKII 91
Query: 384 QREGLLRPIRGMSAVVLGAGPAHACFFATYEHCK 485
+ EG+ RG++ +L + P F+ K
Sbjct: 92 RNEGVYYLFRGVTVPILNSIPNTTVLFSCVSFVK 125
>SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 200
Score = 45.2 bits (102), Expect = 4e-05
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Frame = +3
Query: 252 MTAGAIAGVMEHCIMYPLDSVKTRMQSLRTAHN----STISETFRYMVQREGLLRPI-RG 416
+ GA+AG + YPLD V+ RMQ T + ST TF + +G+ R + RG
Sbjct: 110 LLCGALAGATSQTLAYPLDVVRRRMQLAGTVADGHKYSTCINTFISVYTEDGIRRGLYRG 169
Query: 417 MSAVVLGAGPAHACFFATYEHCKLTLSQ 500
+S L P A FA YE K L++
Sbjct: 170 LSINYLRVCPQVAVMFAVYEVVKQLLTK 197
Score = 31.5 bits (68), Expect = 0.53
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Frame = +3
Query: 252 MTAGAIAGVMEHCIMYPLDSVKTRMQSLRTAHNST---ISETFRYMVQRE-GLLRPIRGM 419
+ AG +AG+ YPLD V++R+ + + A T I +T + + E G++ RG
Sbjct: 2 IVAGGLAGLTACSCTYPLDIVRSRL-AFQVADEHTYCGICQTVKQIFMTEGGMVALYRGF 60
Query: 420 SAVVLGAGPAHACFFATYEHCK 485
+ L PA F +E K
Sbjct: 61 TPTSLSMIPAVGIGFYAFESFK 82
>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 1024
Score = 44.8 bits (101), Expect = 5e-05
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +3
Query: 372 RYMVQREGLLRPIRGMSAVVLGAGPAHACFFATYEHCK--LTLSQMTRHRHDHITHGLSG 545
RYMV+ EG+ +G+ +LG P+ A +FA Y K L S + H S
Sbjct: 782 RYMVKNEGIQSLFKGLGTTLLGVTPSRAIYFAIYSKLKDMLNKSGALGKADGSLIHMTSS 841
Query: 546 CLASLIHDAVSNP 584
+A+ I+ V+NP
Sbjct: 842 AIAAFINHTVTNP 854
Score = 39.1 bits (87), Expect = 0.003
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Frame = +3
Query: 249 HMTAGAIAGVMEHCIMYPLDSVKTRMQ-SLRTAHNSTISETFRYMVQREGLLRPIRGMSA 425
HMT+ AIA + H + PL +KTR+Q + ++ + + EG+ RG++A
Sbjct: 837 HMTSSAIAAFINHTVTNPLWFIKTRLQLENQGGTRASAFKIVSMAYKAEGIRAFYRGLTA 896
Query: 426 VVLGAGPAHACFFATYEHCKLTLSQM-TRHRHD-HITH-----GLSGCLAS 557
+G F YE K L ++ + R D H+ G+S C+A+
Sbjct: 897 SYVGISET-VVHFTIYERLKAELLKLHYKSRRDFHVVECMLAAGISKCIAT 946
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 231 TQNFVTHMTAGAIAGVMEHCIMYPLDSVKTRMQS 332
T + H+ AG + G M PL+ ++TR+QS
Sbjct: 702 THAMIVHLVAGGLGGSMGALATIPLEVIQTRLQS 735
>SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)
Length = 773
Score = 43.6 bits (98), Expect = 1e-04
Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Frame = +3
Query: 243 VTHMTAGAIAGVMEHCIMYPLDSVKTRMQSLRTAHNSTISET---FRYMVQREGLLRPIR 413
V + GA+AG + YPLD V+ RMQ R S T F+ +V+ EG + +
Sbjct: 682 VAKLFCGAVAGAVAQSGTYPLDVVRRRMQMERGEGMFKYSSTWDGFKVIVRSEGFIGLFK 741
Query: 414 GMSAVVLGAGPAHACFFATYEHCK 485
GM +L P FA YE K
Sbjct: 742 GMWPNLLKVAPTIGIQFAVYEVSK 765
>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/78 (30%), Positives = 38/78 (48%)
Frame = +3
Query: 252 MTAGAIAGVMEHCIMYPLDSVKTRMQSLRTAHNSTISETFRYMVQREGLLRPIRGMSAVV 431
+ AG++AGV +YPL+ +KTR+ +T + + Q+EG+ RG+ +
Sbjct: 234 LLAGSMAGVASQTSIYPLEVLKTRLAIRKTGQYRGLLHAASVIYQKEGIRSFYRGLFPSL 293
Query: 432 LGAGPAHACFFATYEHCK 485
LG P A YE K
Sbjct: 294 LGIIPYAGIDLAVYETLK 311
Score = 30.7 bits (66), Expect = 0.92
Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Frame = +3
Query: 252 MTAGAIAGVMEHCIMYPLDSVKTRMQSLRT----AHNSTISETFRYMVQREGLLRPIRGM 419
+ G + YPL V+TR+Q+ + R ++ +G RG+
Sbjct: 331 LACGTASSTCGQLASYPLSLVRTRLQAQAREKGGGQGDNMVSVLRKIITEDGFKGLYRGL 390
Query: 420 SAVVLGAGPAHACFFATYEHCKLTL 494
+ L PA + + YE+ +L L
Sbjct: 391 APNFLKVAPAVSISYVVYENLRLGL 415
>SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 42.3 bits (95), Expect = 3e-04
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Frame = +3
Query: 258 AGAIAGVMEHCIMYPLDSVKTRMQ----SLRTAHNSTISETFRYMVQREGLLRPIRGMSA 425
AG IAG +E C +P + VKT++Q + + + I + + V+ G+L RG+S+
Sbjct: 46 AGGIAGGLEICCTFPTEYVKTQLQLDEKAAKPIYRGPI-DCVKKTVKGHGVLGLYRGLSS 104
Query: 426 VVLGAGPAHACFFATYEHCK 485
++ G+ P + FA +E+ K
Sbjct: 105 LLYGSVPKASVRFAVFEYLK 124
>SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 306
Score = 41.1 bits (92), Expect = 7e-04
Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 3/114 (2%)
Frame = +3
Query: 252 MTAGAIAGVMEHCIMYPLDSVKTRMQSLR---TAHNSTISETFRYMVQREGLLRPIRGMS 422
+ AG +GV+ I P D VK R Q+++ T + F + ++EG L GM
Sbjct: 118 IVAGVSSGVIGSAIATPTDLVKIRFQAVKIGETIPYKNMFHAFYKIAKKEGFLGLWTGMK 177
Query: 423 AVVLGAGPAHACFFATYEHCKLTLSQMTRHRHDHITHGLSGCLASLIHDAVSNP 584
V A TY+H K L R H S +A + V++P
Sbjct: 178 PTVKRAACISGTQIPTYDHTKHLLLNAELMREGVALHLASALVAGFVATCVASP 231
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +3
Query: 225 LPTQNFVTHMTAGAIAGVMEHCIMYPLDSVKTRMQS 332
L + H+ + +AG + C+ P+D V+TR +
Sbjct: 206 LMREGVALHLASALVAGFVATCVASPVDIVRTRFMT 241
>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 264
Score = 40.7 bits (91), Expect = 9e-04
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Frame = +3
Query: 228 PTQNFVTHMTAGAIAGVMEHCIMYPLDSVKTRMQ---SLRTAHN-STISETFRYMVQREG 395
P + + G +AG + I YPLD V+ RMQ ++ H +T T + + +G
Sbjct: 168 PELSIIGGFVCGGVAGAVSQTIAYPLDVVRRRMQLAGAVPDGHKYNTCINTLVNVYKDDG 227
Query: 396 LLRPI-RGMSAVVLGAGPAHACFFATYEHCKLTLSQ 500
+ R + RG+S L P A F YE K L++
Sbjct: 228 IRRGLYRGLSINYLRVCPQVAIMFGVYEVTKQFLNR 263
Score = 39.5 bits (88), Expect = 0.002
Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Frame = +3
Query: 192 VRIMNFEDY-ETLPTQN-FVTHMTAGAIAGVMEHCIMYPLDSVKTRM--QSLRTAHNSTI 359
V+ +++E Y + L T + + + AG++AG+ YPLD V++R+ Q + +TI
Sbjct: 46 VQFLSYEHYSKVLQTSSPAINKLVAGSLAGMTACACTYPLDMVRSRLAFQVAQDQGYTTI 105
Query: 360 SETFRYMVQREGLLRPI-RGMSAVVLGAGPAHACFFATYEHCK 485
++T R + +EG + + +G +L PA F +E K
Sbjct: 106 TQTIRCISVKEGGPKALYKGFVPTLLTIVPAMGIGFYMFETMK 148
Score = 33.9 bits (74), Expect = 0.099
Identities = 20/70 (28%), Positives = 33/70 (47%)
Frame = +3
Query: 345 HNSTISETFRYMVQREGLLRPIRGMSAVVLGAGPAHACFFATYEHCKLTLSQMTRHRHDH 524
++S + FR + + EGLL +G A++L P A F +YEH L + +
Sbjct: 9 YSSEVLTAFRAIYRNEGLLAYFKGNGAMMLRTFPYGAVQFLSYEHYSKVLQTSSPAINKL 68
Query: 525 ITHGLSGCLA 554
+ L+G A
Sbjct: 69 VAGSLAGMTA 78
>SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 434
Score = 39.5 bits (88), Expect = 0.002
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 3/111 (2%)
Frame = +3
Query: 132 KNFIERLESLFLFRAKCQYLVRIMNFEDYETLPTQNFVTHMTAGAIAGVMEHCIMYPLDS 311
K + L S+ F Q + IM ++ N T + GAIAG++ +++PLD
Sbjct: 90 KGLVPSLVSIAPFLGVQQSVYDIMKLRALDSAFAANSGTFLVCGAIAGMIAQTVVHPLDV 149
Query: 312 VKTRMQSLRTAHNS---TISETFRYMVQREGLLRPIRGMSAVVLGAGPAHA 455
V+ +MQ R S T + + ++ G R G++A L PA A
Sbjct: 150 VRRQMQVDRGRSGSITQTSLSALKILWKQGGPRRIYAGLTASYLKVMPAAA 200
Score = 28.7 bits (61), Expect = 3.7
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 5/114 (4%)
Frame = +3
Query: 258 AGAIAGVMEHCIMYPLDSVKTRM----QSLRTAHNST-ISETFRYMVQREGLLRPIRGMS 422
+GA AGV+ +PLD V+ R+ S R+ N T I R + EG+ +G+
Sbjct: 34 SGATAGVVATASTHPLDVVRARLTVQDMSTRSISNYTGIVSALRRIHIEEGIRGLYKGLV 93
Query: 423 AVVLGAGPAHACFFATYEHCKLTLSQMTRHRHDHITHGLSGCLASLIHDAVSNP 584
++ P + Y+ KL + + T + G +A +I V +P
Sbjct: 94 PSLVSIAPFLGVQQSVYDIMKLRALD-SAFAANSGTFLVCGAIAGMIAQTVVHP 146
>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 375
Score = 38.7 bits (86), Expect = 0.003
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Frame = +3
Query: 252 MTAGAIAGVMEHCIMYPLDSVKTRMQ----SLRTAHNSTISETFRYMVQREGLLRPIRGM 419
M AG + ++ +YP + +KTR+ + AH + + +++ EG+L +G+
Sbjct: 156 MLAGTSSTLIAMVTVYPCEVIKTRLTVQHVNKSNAHYKGMRHALKTILREEGILALYKGV 215
Query: 420 SAVVLGAGPAHACFFATYEHCKLTLSQMTRHRHDHITHGLSGCLASLIHDAVSNP 584
+ LG P F Y+ S T I ++GC+A +S+P
Sbjct: 216 TPSFLGLFPFAGGSFLAYQILDKVDSTRTEPSATPICMFVNGCVAGAFAHTLSHP 270
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +3
Query: 222 TLPTQNFVTHMTAGAIAGVMEHCIMYPLDSVKTRMQ 329
T P+ + G +AG H + +P D+++ +MQ
Sbjct: 244 TEPSATPICMFVNGCVAGAFAHTLSHPFDTIRKKMQ 279
>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 37.9 bits (84), Expect = 0.006
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +3
Query: 249 HMTAGAIAGVMEHCIMYPLDSVKTRMQ-SLRTAHNSTISETFRYMVQREGLLRPIRGMSA 425
H+ AG IAG + + PL+ VK +Q ++ + T + + EG+L +G
Sbjct: 37 HLLAGGIAGAVSRTSVSPLERVKILLQIQVKNPKFKGVLPTLIQIGKEEGILGYFKGNGT 96
Query: 426 VVLGAGPAHACFFATYEHCK 485
V+ P A FA YE K
Sbjct: 97 NVIRIFPYSAVQFAAYEEYK 116
Score = 32.3 bits (70), Expect = 0.30
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = +3
Query: 252 MTAGAIAGVMEHCIMYPLDSVKTRMQ--SLRT--AHNSTISETFRYMVQREGLLRPIRGM 419
+ G++AG + YPLD V+ RMQ +R A+ ST+ F +V+ EG +GM
Sbjct: 165 LMCGSLAGAVSQTATYPLDVVRRRMQMKGIRADFAYKSTL-HAFSSIVKLEGFRGLYKGM 223
>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 203
Score = 36.7 bits (81), Expect = 0.014
Identities = 26/109 (23%), Positives = 47/109 (43%)
Frame = +3
Query: 258 AGAIAGVMEHCIMYPLDSVKTRMQSLRTAHNSTISETFRYMVQREGLLRPIRGMSAVVLG 437
AGA A V M P++ +K R+Q + + I + + EG+ R + +
Sbjct: 3 AGACATVFHDGAMNPIEVIKQRLQMYGSPYRGVI-HCATSVFKEEGIRAFYRSYTTQLSM 61
Query: 438 AGPAHACFFATYEHCKLTLSQMTRHRHDHITHGLSGCLASLIHDAVSNP 584
P F YE+ + L+ + +D TH ++G A + A++ P
Sbjct: 62 NIPFQTLHFTVYEYARKALNPL--GGYDPKTHVIAGATAGAVASAITTP 108
Score = 32.7 bits (71), Expect = 0.23
Identities = 31/106 (29%), Positives = 44/106 (41%), Gaps = 13/106 (12%)
Frame = +3
Query: 246 THMTAGAIAGVMEHCIMYPLDSVKTRMQSL-RTAHN------------STISETFRYMVQ 386
TH+ AGA AG + I PLD KT + + R+ N S + FR + Q
Sbjct: 90 THVIAGATAGAVASAITTPLDVAKTLLNTQERSVVNLVGTPKGHVYYVSGMFTAFRTIYQ 149
Query: 387 REGLLRPIRGMSAVVLGAGPAHACFFATYEHCKLTLSQMTRHRHDH 524
G +G+ A V+ P+ A ++ YE K L T H
Sbjct: 150 MRGFPGYFQGLQARVIFQMPSCAICWSVYEFFKHFLHLTTEESEYH 195
>SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22)
Length = 95
Score = 36.3 bits (80), Expect = 0.019
Identities = 19/65 (29%), Positives = 30/65 (46%)
Frame = +3
Query: 291 IMYPLDSVKTRMQSLRTAHNSTISETFRYMVQREGLLRPIRGMSAVVLGAGPAHACFFAT 470
+ YPLD V+ R+ + + + F + + EG+ RG ++G P F T
Sbjct: 6 LTYPLDMVRARLAITQKKKYTGLINAFTRIYRDEGMRTFYRGYVPTLIGIMPYAGISFFT 65
Query: 471 YEHCK 485
YE CK
Sbjct: 66 YETCK 70
>SB_22047| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 421
Score = 36.3 bits (80), Expect = 0.019
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +3
Query: 237 NFVTHMTAGAIAGVMEHCIMYPLDSVKTRMQSLRTAHNSTISETFRYMVQREGLLRPIRG 416
N++ H + +G++ I P D +KTR+ + + + + E F V REGLL +G
Sbjct: 299 NWIVHSMSSVCSGLVAATISTPADVIKTRIMNNPSGYQGAV-ECFMLAVHREGLLSLYKG 357
Score = 35.1 bits (77), Expect = 0.043
Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Frame = +3
Query: 258 AGAIAGVMEHCIMYPLDSVKTRMQS----LRTAHNSTISETF---RYMVQREGLLRPIRG 416
+G AG + I P D VK +MQ L S++ TF R +V + G +G
Sbjct: 137 SGMSAGALGQFISSPTDLVKVQMQMEGRRLSFYPISSVRGTFHAFRNIVDKYGFRGLWKG 196
Query: 417 MSAVVLGAGPAHACFFATYEHCKLTLSQMTRHRHDHITHGLSGCLASLIHDAVSNPA 587
V A + TY+ K L + TR + I H +S + L+ +S PA
Sbjct: 197 WLPNVQRAALVNMGDLTTYDTVKHNLLKHTRLEDNWIVHSMSSVCSGLVAATISTPA 253
Score = 27.1 bits (57), Expect(2) = 0.11
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 468 TYEHCKLTLSQMTRHRHDHITHGLSGCLASLIHDAVSNPA 587
TY+ K L + TR + I H +S + L+ +S PA
Sbjct: 282 TYDTVKHNLLKHTRLEDNWIVHSMSSVCSGLVAATISTPA 321
Score = 25.4 bits (53), Expect(2) = 0.11
Identities = 9/41 (21%), Positives = 21/41 (51%)
Frame = +3
Query: 237 NFVTHMTAGAIAGVMEHCIMYPLDSVKTRMQSLRTAHNSTI 359
N++ H + +G++ I P D +KTR+ + + + +
Sbjct: 231 NWIVHSMSSVCSGLVAATISTPADVIKTRIMNNPSGYQGAV 271
>SB_29345| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 313
Score = 36.3 bits (80), Expect = 0.019
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Frame = +3
Query: 192 VRIMNFEDYETLPTQNFVTHMTAGAIAGVMEHCIMYPLDSVKTRMQSL---RTAHNSTIS 362
V + E E + + + + AG GV +PLD++K R+Q++ + +
Sbjct: 10 VEVAEIEKKEKKASSSGIKNFFAGGFGGVCCIATGHPLDTIKVRLQTMPRPKPGEKPMFT 69
Query: 363 ETF---RYMVQREGLLRPIRGMSAVVLGAGPAHA-CFF 464
TF ++ EG +GM+A + G P A CF+
Sbjct: 70 GTFDCAMKTIRNEGFFGLYKGMAAPITGVTPIFAICFW 107
>SB_52314| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1069
Score = 35.1 bits (77), Expect = 0.043
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +3
Query: 372 RYMVQREGLLRPIRGMSAVVLGAGPAHACFFATYEHCKLTLSQ-MTRHRHDHITHGLSGC 548
RY+ + EG +G+ +L P+ A +F TY+ K L+ + + + +SG
Sbjct: 794 RYIARTEGARSLFKGLCPNLLAVTPSRAIYFTTYQKLKEWLNNGGILAANSSMVYLVSGA 853
Query: 549 LASLIHDAVSNP 584
A +++ ++NP
Sbjct: 854 SAQIVNSTITNP 865
>SB_5442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 34.7 bits (76), Expect = 0.057
Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 8/121 (6%)
Frame = +3
Query: 159 LFLFRAKCQYLVRIMNFEDYETLPTQNFVTHMTAGAIAGVMEHCIMYPLDSVKTRMQSLR 338
LFLF +C L++ + + +E+ T + AG+ A ++ P + +K R+Q+
Sbjct: 81 LFLFYGQCLSLIKTLTGKKHESELT--IFHNACAGSGAAFFMSFVLCPAELIKCRLQAQH 138
Query: 339 TAH--------NSTISETFRYMVQREGLLRPIRGMSAVVLGAGPAHACFFATYEHCKLTL 494
+ S + + +++ +G RGM+A P + FF YE + L
Sbjct: 139 QTNLISGMAGPKSGVIDVTMQIIRNDGFQGLFRGMTATWAREVPGYFFFFGGYEFSRYML 198
Query: 495 S 497
+
Sbjct: 199 T 199
Score = 28.3 bits (60), Expect = 4.9
Identities = 20/96 (20%), Positives = 37/96 (38%)
Frame = +3
Query: 234 QNFVTHMTAGAIAGVMEHCIMYPLDSVKTRMQSLRTAHNSTISETFRYMVQREGLLRPIR 413
+ T TAGA+ G P D++K +MQ+ + + + + Q EG
Sbjct: 7 KRMATDFTAGAMGGTACVFAGQPFDTIKVKMQTFPSMSKNALDCGIKTFKQ-EGFKGLYA 65
Query: 414 GMSAVVLGAGPAHACFFATYEHCKLTLSQMTRHRHD 521
G + ++ F Y C + +T +H+
Sbjct: 66 GTIPSLAANIAENSFLFLFYGQCLSLIKTLTGKKHE 101
>SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 309
Score = 32.7 bits (71), Expect = 0.23
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Frame = +3
Query: 249 HMTAGAIAGVMEHCIMYPLDSVKTRMQSL------RTAHNSTISETFRYMVQREGLLRPI 410
++ AG+++G++ PLD +K R+Q++ TA + F V+ EGL
Sbjct: 23 NLIAGSVSGMLGCAAGQPLDLLKVRLQAMNQVKPGETAPFKGAMDCFMKTVRLEGLRGLY 82
Query: 411 RGMSAVVLGAGPAHACFF 464
+GM + +L A P+ A F
Sbjct: 83 KGMLSPLLMATPSTALTF 100
Score = 31.5 bits (68), Expect = 0.53
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +3
Query: 252 MTAGAIAGVMEHCIMYPLDSVKTRMQ-SLRTAHNSTISETFRYMVQREGLLRPIRGMSAV 428
++AG IAG+ +M+P+D +KTR+Q + + + + ++ EG + +G
Sbjct: 223 VSAGGIAGLALWGLMFPVDMLKTRVQIAPMGRYPRGARDVLKEVLCNEGPMALYKGYVPG 282
Query: 429 VLGAGPAHACFFATYE 476
++ A H F YE
Sbjct: 283 MIRAVVTHCGLFIGYE 298
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 32.7 bits (71), Expect = 0.23
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Frame = +3
Query: 294 MYPLDSVKTRMQSLRT------AHNSTISETFRYMVQREGLLRPIRGMSAVVLGAGPAHA 455
+YP+D VKTRMQ+ R + ++I + F +V+ EG + RG+ +LG P A
Sbjct: 931 VYPIDLVKTRMQNQRAVLEAEKVYKNSI-DCFFKVVRNEGPIGLYRGLLPQLLGVSPEKA 989
Query: 456 CFFAT 470
T
Sbjct: 990 IKLTT 994
>SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42)
Length = 247
Score = 32.7 bits (71), Expect = 0.23
Identities = 22/72 (30%), Positives = 36/72 (50%)
Frame = +3
Query: 249 HMTAGAIAGVMEHCIMYPLDSVKTRMQSLRTAHNSTISETFRYMVQREGLLRPIRGMSAV 428
++ AG++ GV PLD++K R+Q+ + + + V+ EG+ +GM A
Sbjct: 72 NLIAGSVGGVTGVTAGQPLDTIKVRLQA---SFGAGPLDMLARTVKTEGVRGLYKGMLAP 128
Query: 429 VLGAGPAHACFF 464
VL A P A F
Sbjct: 129 VLVAAPVTAVSF 140
>SB_21044| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 1507
Score = 31.5 bits (68), Expect = 0.53
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Frame = -1
Query: 541 DKPCVMWSCRCLVI-CDNVSLQCSYVAKKHACAGPAPSTTADIPRIGLNKPSRCTIYRNV 365
D PCV++ C C++ C V C V + C P D PR+ + P C Y
Sbjct: 718 DCPCVIYGCPCVIYDCPRVIYDCPCVI--YDC----PRVIYDCPRVIYDFP--CVTYDCP 769
Query: 364 SLMVLLWAVRKDCIRVLTESSGYIMQC 284
++ V DC RV+ + I C
Sbjct: 770 RVIYDYPCVTYDCPRVIYDCPCVIYGC 796
>SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 274
Score = 31.1 bits (67), Expect = 0.70
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Frame = +3
Query: 258 AGAIAGVMEHCIMYPLDSVKTRMQSLRTAHNSTIS------ETFRYMVQREGLLRPIRGM 419
AG++AG+ + ++ P+D VK ++Q A ST S + + + GL +G
Sbjct: 39 AGSVAGLAQVPLIAPVDLVKIKLQMQTEAKRSTRSVYRGPVDCLVKLYRSRGLAGCFQGN 98
Query: 420 SAVVLGAGPAHACFFATYE 476
+ + P A +F YE
Sbjct: 99 TVTAVRDIPGFAVYFGVYE 117
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 231 TQNFVTHMTAGAIAGVMEHCIMYPLDSVKTRMQS 332
++ T++ AG AGV+ +P D +K+R+Q+
Sbjct: 129 SRGVATYLMAGGFAGVVSWASTFPFDVIKSRIQA 162
>SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44)
Length = 192
Score = 30.7 bits (66), Expect = 0.92
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Frame = +3
Query: 237 NFVTHMTAGAIAGVMEHCIMYPLDSVKTRMQSLRTAHNST----ISETFRYMVQREGLLR 404
N V H A I+G+ P+D KTR+Q++R + +V+ EG+
Sbjct: 92 NIVCHFGASMISGLATTVASMPVDIAKTRIQNMRIIDGKPEYKGTMDVLARIVRNEGVFA 151
Query: 405 PIRGMSAVVLGAGP 446
+G + GP
Sbjct: 152 LWKGFTPYYFRIGP 165
>SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 30.7 bits (66), Expect = 0.92
Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Frame = +3
Query: 243 VTHMTAGAIAGVMEHCIMYPLDSVKTRMQSL----------RTAHNSTISETFRYMVQRE 392
+ +T GA++G++ ++ P D +K R+Q R + + FR +++ E
Sbjct: 30 IESLTCGALSGMISKAVILPFDIIKKRIQVQGFEEARQSFGRVQQYDGVKDCFRTILKEE 89
Query: 393 GLLRPIRGMSAVVLGAG 443
G + +G++ L G
Sbjct: 90 GAMGLFKGLAPSTLKVG 106
>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1449
Score = 30.7 bits (66), Expect = 0.92
Identities = 21/79 (26%), Positives = 35/79 (44%)
Frame = -3
Query: 491 R*FAVLVCGEEACVRWTRSEHHCRHSADRP**AFPLHHIPKCFAYGAIVGRPQRLHSSLN 312
R F +C + + ++H RHS ++P FP H KCFA + R H++ +
Sbjct: 997 RPFQCQICHKSFHMAGDLTKHAKRHSGEKP---FPCQHCSKCFA----TAQQARKHANSH 1049
Query: 311 GVQRVHYAMLHNTRYRPGS 255
++ M R+R S
Sbjct: 1050 HTPLPYHCMGCGKRFRDRS 1068
>SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 240 FVTHMTAGAIAGVMEHCIMYPLDSVKTRMQ 329
F TH +GAI+G+ I P D VKT Q
Sbjct: 160 FGTHFLSGAISGLFAALITQPFDVVKTHRQ 189
>SB_45992| Best HMM Match : HCO3_cotransp (HMM E-Value=0)
Length = 890
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -3
Query: 353 AIVGRPQRLHSSLNGVQRVHYAMLHNTRYRPGSH 252
+++G P + ++ V +H M+H+T + PG H
Sbjct: 732 SVLGLPWMCATPVHTVSHLHALMVHSTNHAPGEH 765
>SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34)
Length = 302
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 237 NFVTHMTAGAIAGVMEHCIMYPLDSVKTRMQS 332
+F + GAIAG++ +PLD KTR+Q+
Sbjct: 61 SFSAKLLNGAIAGMVGVTCTFPLDLCKTRLQN 92
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 258 AGAIAGVMEHCIMYPLDSVKTRMQSL 335
AG +AG+ + PLD +KTR+Q L
Sbjct: 211 AGCLAGMTASVAVNPLDVIKTRLQLL 236
>SB_6907| Best HMM Match : PAN (HMM E-Value=0.019)
Length = 324
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 457 HACAGPAPSTTADIPRIGLNKPSRCTIYRN 368
+AC AP ++ RIG P RCT RN
Sbjct: 121 NACLTSAPCSSHRACRIGYEDPFRCTCQRN 150
>SB_6551| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 330
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/68 (30%), Positives = 27/68 (39%)
Frame = -3
Query: 518 MPMPGHL**R*FAVLVCGEEACVRWTRSEHHCRHSADRP**AFPLHHIPKCFAYGAIVGR 339
M MP H R F VCG+ + T H H+ DRP H K F + +
Sbjct: 180 MKMPSHTGTRPFVCGVCGKGFRLSSTLCRHKIIHTTDRP---HKCHICNKAFNRSSTLKT 236
Query: 338 PQRLHSSL 315
R HS +
Sbjct: 237 HIRTHSEV 244
>SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 612
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 234 QNFVTHMTAGAIAGVMEHCIMYPLDSVKTRMQ 329
QNF+ + AGA+A V + P D VKTR+Q
Sbjct: 525 QNFICGIMAGAMASV----VTQPADVVKTRLQ 552
>SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)
Length = 868
Score = 27.9 bits (59), Expect = 6.5
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Frame = +3
Query: 249 HMTAGAIAGVMEHCIMYPLDSVKTRMQS--LRTAHNSTIS--ETFR--YMV-QREGLLRP 407
+ GA G++ I P+D K++MQ +R + I F Y + Q G+
Sbjct: 204 YYACGAGTGLVVAFIEGPIDLFKSKMQVQIIRAQSGAPIQYRNVFHAGYTIAQTYGIRGC 263
Query: 408 IRGMSAVVLGAGPAHACFFATYEHCKLTLS 497
+G+SA ++ PA+ FF YE K L+
Sbjct: 264 YQGLSATLVRNIPANGFFFGFYEFTKNLLT 293
>SB_54436| Best HMM Match : PH (HMM E-Value=0.18)
Length = 940
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 345 HNSTISETFRYMVQREGLLRPIRGMSAVVLGAGPA 449
+ S ++ F++ +Q LLR G+SAVV G G A
Sbjct: 324 YQSDLAYDFKFCLQTARLLRTKSGLSAVVGGKGGA 358
>SB_33309| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 646
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/70 (25%), Positives = 31/70 (44%)
Frame = -3
Query: 530 RYVVMPMPGHL**R*FAVLVCGEEACVRWTRSEHHCRHSADRP**AFPLHHIPKCFAYGA 351
RY++M + H + + CG+ + +EH HS ++P K FA +
Sbjct: 374 RYMIMHILTHTKYKPYKCTQCGKAFAHASSLTEHMRTHSGEKP---HKCTQCGKAFARAS 430
Query: 350 IVGRPQRLHS 321
++ R R HS
Sbjct: 431 VLTRHMRTHS 440
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,177,789
Number of Sequences: 59808
Number of extensions: 455977
Number of successful extensions: 1089
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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