Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c14r
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.03c |nta1||protein N-terminal amidase Nta1 |Schizosacch...    35   0.014
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      29   0.95 
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc...    25   8.9  

>SPBC23E6.03c |nta1||protein N-terminal amidase Nta1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 34.7 bits (76), Expect = 0.014
 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
 Frame = -2

Query: 381 LAIPRGLESGLNFKLAIIITPSENSSVMDHAPEVNYYKQVSYEYDTKP-LGFPFHRNSGF 205
           L  P    +G NFK +  I P   +   +H P + + ++VS +Y     +GFP  +NS  
Sbjct: 39  LVFPEMCLTGYNFKNSESIQPFLENVTSNHCPSIQFAQEVSEQYRCYTIIGFPEFQNSNG 98

Query: 204 QNSLASNYRLFD-----IKIYHR 151
            ++L ++  L       + +YH+
Sbjct: 99  ISTLYNSTALISPKKELLNVYHK 121


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -2

Query: 501  KSKKYSYFKDDISQHYFHNYDYKKSARKGTKFNLFKFPGNLAIPRGL 361
            +SKK        S+ YFH  D +KS R   +F  FK+P      RG+
Sbjct: 1361 QSKKGKKKLIPFSKQYFHMRDLRKSGRV-PRFGSFKYPALKLYDRGV 1406


>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -2

Query: 513 WNPHKSK-KYSYFKDDISQHYFHNYDYKKSARKGTKFNLFKFPGNLAIPRGLES 355
           W  H SK   ++FKDD  Q   H  +  +    G    +FK P  L  P+  +S
Sbjct: 118 WGTHHSKIMVNFFKDDSCQIVIHTANLVEPDWIGMSQAIFKTP--LLYPKANDS 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,858,853
Number of Sequences: 5004
Number of extensions: 58990
Number of successful extensions: 172
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)