Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c14r
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1339 + 26252609-26252925,26253025-26253227,26253379-262535...    29   5.3  
01_01_1043 + 8228201-8228209,8228364-8228439,8228527-8228903           29   5.3  
08_01_0298 - 2406254-2406322,2406444-2406541,2408652-2408769,240...    28   7.0  
11_04_0313 + 16270807-16272271,16272713-16274140,16274289-16274788     28   9.3  

>08_02_1339 +
           26252609-26252925,26253025-26253227,26253379-26253536,
           26253802-26253870,26253980-26254461,26254558-26254766,
           26254865-26254901,26254991-26255075,26255186-26255269,
           26255344-26255412,26255520-26255663
          Length = 618

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 471 DISQHYFHNYDYKKSARKGTKFNLFKFPGNLAIPRGLESGLNFK 340
           D+ + +  N+DY   A K  K  +   PG L I   L+S  +FK
Sbjct: 68  DLEKGWSSNFDYLYEAEKECKCLVHALPGGLQICPALDSITSFK 111


>01_01_1043 + 8228201-8228209,8228364-8228439,8228527-8228903
          Length = 153

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -2

Query: 288 PEVNYYKQVSYEYDTKP-LGFPFHRNSG 208
           P+  +YK  SY Y   P  GF +H  SG
Sbjct: 120 PDCYFYKSYSYSYKPSPSFGFGYHLESG 147


>08_01_0298 -
           2406254-2406322,2406444-2406541,2408652-2408769,
           2408890-2408980,2409243-2409406,2410027-2410242,
           2410405-2410475,2410552-2410619,2412027-2412166
          Length = 344

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -3

Query: 614 DPTVASTTVGNVLRSFTNWIFLTSLYIQDLT*SVGIHINQKNIHIL 477
           DP      V  +L S  +W +  + +++ L   V +H ++KNI+ L
Sbjct: 33  DPDHLLVMVHGILGSNADWQYAANEFVKQLPDDVIVHCSEKNINTL 78


>11_04_0313 + 16270807-16272271,16272713-16274140,16274289-16274788
          Length = 1130

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 6/109 (5%)
 Frame = -2

Query: 585 ERFEEFYELDIFNFTLHTGLNVISWNPHKSKKYSYFKDDISQ----HYFHNYDYKKSARK 418
           E F++FY L +FN     G  + S   H S+K    +  I         H+    K+ ++
Sbjct: 604 ENFDKFYHLLVFNI---RGCQLRSLPDHTSQKLLRVRHIIGPASLVSSIHHIGNLKNLQE 660

Query: 417 GTKFNLFKFPGNLAIPRGLE--SGLNFKLAIIITPSENSSVMDHAPEVN 277
             +F + K PG+     G+E    +N + ++ IT  EN      A EVN
Sbjct: 661 LQEFRVGKRPGH-----GIEELQDMNLRKSLSITNLENVISATKAGEVN 704


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,670,945
Number of Sequences: 37544
Number of extensions: 282735
Number of successful extensions: 649
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)