Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c14r
         (760 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38058| Best HMM Match : TP2 (HMM E-Value=0.072)                     32   0.58 
SB_35257| Best HMM Match : Sec8_exocyst (HMM E-Value=0.59)             32   0.58 
SB_42639| Best HMM Match : Homeobox (HMM E-Value=1e-26)                28   9.5  
SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)                28   9.5  

>SB_38058| Best HMM Match : TP2 (HMM E-Value=0.072)
          Length = 399

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
 Frame = -2

Query: 414 TKFNL-FKFPGNLAIPRGLESGLNFKLAIIITPSENSSV-MDHAPEVNYYKQVSYEYDTK 241
           TKF + +KFP N  +P   +  +N+K+ +    S N  V +++   VNY   V+Y+    
Sbjct: 14  TKFPVNYKFPVNYKVPVNYKVPVNYKVPVNYKVSVNYKVPVNYKVSVNYKVSVNYKVSVN 73

Query: 240 PLGFPFHRNSGFQNSLASNYRL 175
              FP +        +  NY++
Sbjct: 74  -YKFPVNYKFPVNYKVPVNYKV 94



 Score = 30.3 bits (65), Expect = 1.8
 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = -2

Query: 468 ISQHYFHNYDYKKSARKGTKFNLFKFPGNLAIPRGLESGLNFKLAIIITPSENSSV-MDH 292
           +S +Y  + +YK S       N +KFP N  +P   +  +N+K+++      N  V +++
Sbjct: 58  VSVNYKVSVNYKVSVNYKFPVN-YKFPVNYKVPVNYKVPVNYKVSVNYKVPVNYKVSVNY 116

Query: 291 APEVNYYKQVSYE 253
              VNY   V+Y+
Sbjct: 117 KVPVNYKFPVNYK 129


>SB_35257| Best HMM Match : Sec8_exocyst (HMM E-Value=0.59)
          Length = 1060

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = -2

Query: 321  PSENSSVMDHAPEVNYYKQVSYEYDTKPLGFPFHRNSGFQNSLASNYRLFDIKIYHRKSD 142
            PS+  S        NY +  +Y    KP+GF   + S  QNS++ +  LF   +     D
Sbjct: 895  PSDKVSNSTFDVTDNYRQTTNYRQTKKPVGFTLPQTSSSQNSMSYSQELFSSMVGFASQD 954


>SB_42639| Best HMM Match : Homeobox (HMM E-Value=1e-26)
          Length = 225

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +3

Query: 147 SFCGKF*YQKAYS*MPTNFEN--PNFYEKENLKVLY 248
           S+ G +    AY   PT +    PNFY   NL+V+Y
Sbjct: 182 SYYGDYVLPSAYLPTPTRYYGLLPNFYPSSNLQVVY 217


>SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)
          Length = 1064

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +3

Query: 147  SFCGKF*YQKAYS*MPTNFEN--PNFYEKENLKVLY 248
            S+ G +    AY   PT +    PNFY   NL+V+Y
Sbjct: 1021 SYYGDYVLPSAYLPTPTRYYGLLPNFYPSSNLQVVY 1056


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,500,106
Number of Sequences: 59808
Number of extensions: 367912
Number of successful extensions: 808
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)