Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c14r
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54342-11|CAA91146.1|  502|Caenorhabditis elegans Hypothetical p...    30   1.6  
Z93383-14|CAB07631.2|  279|Caenorhabditis elegans Hypothetical p...    28   6.3  
Z74029-7|CAA98430.2|  280|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>Z54342-11|CAA91146.1|  502|Caenorhabditis elegans Hypothetical
           protein C08H9.5 protein.
          Length = 502

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = -2

Query: 201 NSLASNYRLFDIKIYHRKSDVDESGYFSSNLY*YSFGF*VCSFVKKKVYLCTLISTKRSR 22
           +SL+ N+    ++   R +D DE+G+  SN+    F    C FV   + +C LI    SR
Sbjct: 43  SSLSRNFE-DSLRRIPRSTDKDETGFEDSNVQEVIFILLYCLFVALAILICGLIIFYNSR 101


>Z93383-14|CAB07631.2|  279|Caenorhabditis elegans Hypothetical
           protein F54B8.12 protein.
          Length = 279

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = -2

Query: 606 CSFNNCWERFEEFYELDIFN 547
           C+FN C++++ EF+E  +F+
Sbjct: 162 CTFNECYQKYWEFHEQVVFS 181


>Z74029-7|CAA98430.2|  280|Caenorhabditis elegans Hypothetical
           protein C45B11.2 protein.
          Length = 280

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 1/101 (0%)
 Frame = -2

Query: 672 LNFTVDSKIDKNVIVRLFLGPNCSFNNCWERFEEFYELDIFNF-TLHTGLNVISWNPHKS 496
           LN   +  I + +++  F  P C      E FE FY +  F++ T     +  S N    
Sbjct: 88  LNIGWNVIIVERIVLHTFSWPVCICEPLSETFENFYAIRTFHYLTGGNEYHRTSINSIFG 147

Query: 495 KKYSYFKDDISQHYFHNYDYKKSARKGTKFNLFKFPGNLAI 373
           K YS F  +         D K        +N+ + P N  +
Sbjct: 148 KLYSSFLKECPVE-IDGADTKNECTPSITYNILRAPTNYLV 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,348,929
Number of Sequences: 27780
Number of extensions: 310763
Number of successful extensions: 854
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)