Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10c14f
(642 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 30 0.33
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe... 29 0.43
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|... 27 1.7
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 27 1.7
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|... 27 1.7
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|... 27 2.3
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|... 27 2.3
SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ... 27 3.0
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch... 26 4.0
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 26 5.3
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.3
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual 25 9.3
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 25 9.3
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 25 9.3
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 25 9.3
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 29.9 bits (64), Expect = 0.33
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +1
Query: 121 THQQLVARYNLEKQHL-LHMNHSYPNETEYDPSLIYDNGLRFPIRYINYELDWTDER 288
T+QQ +A L+KQ H ++ + +P +I D RY ++E DW +
Sbjct: 555 TYQQYIAGQELKKQSWRFHKKYTTWFQRHEEPKMITDEFESGSYRYFDFEGDWVQRK 611
>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 29.5 bits (63), Expect = 0.43
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = +2
Query: 20 LIVIIWACICYILFGCL 70
+I ++W IC++LFGC+
Sbjct: 155 IIWLLWVVICFVLFGCI 171
>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
3|||Manual
Length = 418
Score = 27.5 bits (58), Expect = 1.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 23 IVIIWACICYILFGCL 70
I + W IC+ILFGC+
Sbjct: 212 IWLAWVVICFILFGCV 227
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 27.5 bits (58), Expect = 1.7
Identities = 19/75 (25%), Positives = 30/75 (40%)
Frame = +1
Query: 118 NTHQQLVARYNLEKQHLLHMNHSYPNETEYDPSLIYDNGLRFPIRYINYELDWTDERAEA 297
NTH+Q++ N + + +PNET + S + + I N+ W D
Sbjct: 1036 NTHKQIIEHVNFIMDNPELTDDDFPNETRFMTSFFFQ---IYKISMRNFVAYWRDSSLLR 1092
Query: 298 EGVWINIRKCIERGF 342
V NI + GF
Sbjct: 1093 ARVAFNIVAGLIIGF 1107
>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
3|||Manual
Length = 402
Score = 27.5 bits (58), Expect = 1.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 23 IVIIWACICYILFGCL 70
I + W IC+ILFGC+
Sbjct: 202 IWLAWVVICFILFGCV 217
>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
3|||Manual
Length = 393
Score = 27.1 bits (57), Expect = 2.3
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 20 LIVIIWACICYILFGCL 70
+I ++W IC ILFGC+
Sbjct: 237 IIWLLWLIICCILFGCV 253
>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
3|||Manual
Length = 368
Score = 27.1 bits (57), Expect = 2.3
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 20 LIVIIWACICYILFGCL 70
+I ++W IC ILFGC+
Sbjct: 204 IIWLLWLIICCILFGCV 220
>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 26.6 bits (56), Expect = 3.0
Identities = 18/86 (20%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Frame = +1
Query: 112 FFNTHQQLVARYNLEKQHLLHMNHSYPNETEYDPSLIYDNGLR--FPIRYINYELDWTDE 285
++N Q +N+ H +HS+ + + +DPS + LR F + ++ L W +E
Sbjct: 19 YYNWLQYNCKAFNVGNFRRKHASHSHDDASFFDPSNEEASKLRESFAMDTLDALLQWFEE 78
Query: 286 RAEAEGVWINIRKCIERGFIVMDGIT 363
G++ +R ++D ++
Sbjct: 79 EDGVVGIFDATNSTSKRRKAIVDHLS 104
>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 334 FQYTYVCLSTHPPLQLFRLSNPVHNLY 254
F +T LST L+ +S P+HN+Y
Sbjct: 310 FHFTQPRLSTIQAALLYLISRPLHNMY 336
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 371 IFNVMPSITINPLSIHLRMF 312
IFN P NPL+IHL+ F
Sbjct: 1549 IFNFSPKDRPNPLTIHLQSF 1568
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 25.8 bits (54), Expect = 5.3
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = +1
Query: 61 WMSNDELDLLNLRHAEHFFNTHQQLVARYN----LEKQHLLHMNHSYPNETEY 207
++S L N H H + +RYN LE + LLH+N P ET Y
Sbjct: 416 FLSRKSLPPYNGIHRLHESPSQFSNQSRYNWEPILENRSLLHLNRPPPIETHY 468
>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 25.0 bits (52), Expect = 9.3
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -1
Query: 405 FSHYAXXXXXXXX*CDA-IHNNKSSFNTLTYVYPHTLRFSSFVCPIQFI 262
FS YA A I N + + +V+ + F SF+CPI FI
Sbjct: 251 FSFYADMLMTLVLIISAYIALNAVASVVIAFVFLSLIFFISFICPIWFI 299
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 25.0 bits (52), Expect = 9.3
Identities = 7/27 (25%), Positives = 19/27 (70%)
Frame = +1
Query: 550 TFWKMIEYYLNVMKYFRHFMDPFLMEE 630
+FWK+ EY+ +V + + ++P ++++
Sbjct: 471 SFWKLSEYFPSVQEELTNTLEPSVLKQ 497
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 25.0 bits (52), Expect = 9.3
Identities = 8/33 (24%), Positives = 19/33 (57%)
Frame = +1
Query: 187 YPNETEYDPSLIYDNGLRFPIRYINYELDWTDE 285
+PN+ E + + + +R+ +++ EL W+ E
Sbjct: 1131 FPNDKEEEAKELMLSAMRYGCDFVDVELGWSSE 1163
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 25.0 bits (52), Expect = 9.3
Identities = 14/68 (20%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = +1
Query: 391 SIMAKLIKSNLDNARMAKILREIFGNMR-NRHPIDEYN--PAPSVFYHPETSLRDPTFWK 561
+I+ +S+ N+ I +I N+ + +D ++ PSVF+ + +L DP +
Sbjct: 128 TILRPASESSYPNSNSETITYDIDDNVNPSSSLVDNFSISSVPSVFFQSDFNLDDPQIFD 187
Query: 562 MIEYYLNV 585
++ ++++
Sbjct: 188 VVSEHIDI 195
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,835,282
Number of Sequences: 5004
Number of extensions: 61828
Number of successful extensions: 180
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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