Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c14f
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51675| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.15 
SB_7619| Best HMM Match : ArfGap (HMM E-Value=5.3)                     32   0.46 
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)            29   4.2  
SB_43570| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_43101| Best HMM Match : TPR_2 (HMM E-Value=0.72)                    28   5.6  
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_20554| Best HMM Match : C4dic_mal_tran (HMM E-Value=2.2)            28   7.4  

>SB_51675| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 689

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = +1

Query: 43  HLLHPFWMSNDELDLLNLRHAEHFFNTHQQLV---ARYNLEKQHLLHMNHSYPNETEY 207
           H + PFW++ +E  L  L+ A+ F   + + +   A +N+   +L  +  +YPN  ++
Sbjct: 340 HYMRPFWLALEEHSLRKLKRAKKFPENNLECMGSEALHNITLDYLYSLYEAYPNTPKF 397


>SB_7619| Best HMM Match : ArfGap (HMM E-Value=5.3)
          Length = 483

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +1

Query: 451 REIFGNMRNRHPIDEYNP 504
           R  FGN +N++P+DE+NP
Sbjct: 426 RRAFGNYKNKYPVDEHNP 443


>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
          Length = 509

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/64 (21%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +1

Query: 43  HLLHPFWMSNDELDLLNLRHAEHFFNTHQQLVARYNLEKQHLLHMN-HSYPNETEYDPSL 219
           H+LH    SN+   +L+ +   H  ++++     ++ E  H+LH N H++   ++ D  +
Sbjct: 283 HILH----SNEHAHILHSKEHAHILHSNEHAHILHSNEHAHILHSNEHAHILHSDEDAHI 338

Query: 220 IYDN 231
           ++ +
Sbjct: 339 LHSD 342


>SB_43570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
 Frame = +1

Query: 73  DELDLLNLRHAEHFFNTHQQLVARYNLEKQHLLHM--NHSYPNETEYDPSLIYDNGLRFP 246
           ++  LL+L +  H F  H     R N        M  NH    E  + P+ I+ NG+   
Sbjct: 53  EQTGLLDLENPIHLFTLHLVFTQRINTALNDFKEMFNNHKLSTEHGWTPNQIWMNGMLDQ 112

Query: 247 IRYINYELD 273
              +N + D
Sbjct: 113 SNPLNTDSD 121


>SB_43101| Best HMM Match : TPR_2 (HMM E-Value=0.72)
          Length = 1041

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +1

Query: 124 HQQLVARYNLEKQHLLHMNHSYPNETEYDPSLIYDNGLRFPIRYINYELDWTDERAEAE 300
           +Q + + Y L+  H+LH+N   P+     P+L  D   +F I      LDW +    AE
Sbjct: 116 YQSMKSVYGLQACHMLHINSINPSMPNPVPNL-PDPWSQFIIPASTDTLDWDEADRSAE 173


>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 109 HFFNTHQQLVARYNLEKQHLLHMNHSYPNET 201
           H ++ H QL  RY+ +   ++H  H +P  T
Sbjct: 411 HRYHQHPQLTHRYHHQHPQVIHRYHQHPQVT 441


>SB_20554| Best HMM Match : C4dic_mal_tran (HMM E-Value=2.2)
          Length = 171

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 211 PSLIYDNGLRFPIRYINYELDW 276
           P  IYDN  R+P+   NY   W
Sbjct: 75  PVFIYDNIFRYPVNDFNYRCVW 96


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,628,062
Number of Sequences: 59808
Number of extensions: 423985
Number of successful extensions: 989
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)