Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c14f
         (642 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g56610.1 68414.m06511 syntaxin-related family protein similar...    29   2.0  
At1g10950.1 68414.m01257 endomembrane protein 70, putative             28   4.6  
At1g65950.1 68414.m07483 ABC1 family protein contains Pfam domai...    28   6.1  

>At1g56610.1 68414.m06511 syntaxin-related family protein similar to
           proteins At3g54160, At1g47920 (syntaxin SYP81),
           At5g41830, At3g44180, At3g58890, At1g48390,  At3g59270
           [Arabidopsis thaliana]; contains a novel domain similar
           to F-box that is shared among other proteins in
           Arabidopsis
          Length = 535

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 30/136 (22%), Positives = 60/136 (44%), Gaps = 4/136 (2%)
 Frame = +1

Query: 79  LDLLNLRHAEHFFNTHQQLVARYNLEKQHLLHMNHSYPNETEYDPSLIYDNGL-RFPIRY 255
           L L N R  E   N  ++     +L K    H+    P +T    SL++  G  R  ++ 
Sbjct: 54  LCLFNFRFVEMTSNNKKKKTELCDLPKCLAPHILSWLPTKTAVTVSLLFMKGWWRSEMKN 113

Query: 256 IN-YELDWTDERAEAEGVWINIRKCIERGFIVMDGITLNMNNDDHVSIMAKLIKSNLDNA 432
           ++  +  ++D++ E   V    +   +RG   +D  +L +N++     +  L+   LDN 
Sbjct: 114 LSSLKFSFSDDQEEEHFVRFVDQVLRQRGNRKLDSFSLTLNDEIDGGFVTHLVDYPLDNG 173

Query: 433 --RMAKILREIFGNMR 474
             ++   + +I GN +
Sbjct: 174 VEKLKLSIYDIKGNFQ 189


>At1g10950.1 68414.m01257 endomembrane protein 70, putative
          Length = 589

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 55  PFWMSNDELDL-LNLRHAEHFFNTHQQLVARYNLEKQHLLHMNHSYPN 195
           P W    EL    N  + +H   TH+ +V +YN  K  ++H+N +  N
Sbjct: 133 PLWGFVGELHPDKNSENGKHVLYTHKNIVVKYN--KDQIIHVNLTQDN 178


>At1g65950.1 68414.m07483 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 551

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 8/103 (7%)
 Frame = +1

Query: 247 IRYINYELDWTDERAEAEGVWINIRK-------CIERGFIVMDGITLNMNNDDHVSIMAK 405
           ++ I+ ELD+  E   +E +  N +         +   F     +T+       V  +  
Sbjct: 236 VKSISQELDFLQEAKNSERIAKNFKHNKMITIPTVFSEFTTTQVLTMQFCKGFKVDDVES 295

Query: 406 LIKSNLDNARMAKILREIFGNMRNRHPIDEYNPAP-SVFYHPE 531
           L ++N+   ++AK+L E+F  M   H     +P P ++   PE
Sbjct: 296 LKRTNVSPEKVAKVLVEVFAEMIFVHGFIHGDPHPGNILVSPE 338


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,380,001
Number of Sequences: 28952
Number of extensions: 302205
Number of successful extensions: 699
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)