Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10c13r
(724 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 290 1e-79
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 196 3e-51
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 186 2e-48
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 161 7e-41
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 158 9e-40
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 128 6e-31
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 52 1e-07
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 52 1e-07
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 48 2e-06
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 27 2.1
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1... 27 2.7
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 26 4.7
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 26 4.7
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom... 25 8.3
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 290 bits (712), Expect = 1e-79
Identities = 134/224 (59%), Positives = 171/224 (76%), Gaps = 1/224 (0%)
Frame = -3
Query: 719 LDDDGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNEARK 540
LDD+G+LT LG +EFPLDP LA MLI S CSNE+LS+TA+LSVP FVRPN ARK
Sbjct: 486 LDDNGDLTPLGRKASEFPLDPNLAVMLIRSPEFYCSNEVLSLTALLSVPNVFVRPNSARK 545
Query: 539 AADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPHWCYDNFINYRSLKSGDNVRQQLSRIM 360
ADE + +F H DGDHLTLLNVYHA+K WC+++F+++R+L S DNVR+QL R M
Sbjct: 546 LADEMRQQFTHPDGDHLTLLNVYHAYKSGEGTADWCWNHFLSHRALISADNVRKQLRRTM 605
Query: 359 DRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERTG-SYLTVKDNQVVQLHPSTCL 183
+R ++ ST F K+YY+NIR+ALV+GFFMQVA G +Y+T+KDNQVV LHPS L
Sbjct: 606 ERQEVELISTPFDDKNYYVNIRRALVSGFFMQVAKKSANGKNYVTMKDNQVVSLHPSCGL 665
Query: 182 DHKPDWVIYNEFVLTTKNYIRTVTDIKPEWLLKIAPQYYELGNF 51
P+WV+YNEFVLTTK++IR VT I+PEWL+++AP YY+L +F
Sbjct: 666 SVTPEWVVYNEFVLTTKSFIRNVTAIRPEWLIELAPNYYDLDDF 709
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 196 bits (478), Expect = 3e-51
Identities = 98/228 (42%), Positives = 146/228 (64%), Gaps = 2/228 (0%)
Frame = -3
Query: 722 ALDDDGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNEAR 543
ALDD+G LT LG MA+FP++PQL+K+LI S CS E+LSI AMLSVP + RP E +
Sbjct: 912 ALDDEGLLTPLGRKMADFPMEPQLSKVLITSVELGCSEEMLSIIAMLSVPNIWSRPREKQ 971
Query: 542 KAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPHWCYDNFINYRSLKSGDNVRQQLSRI 363
+ AD + +FA+ + DHLTLLNVY +K N +WCY+++I R ++ ++VR+QL R+
Sbjct: 972 QEADRQRAQFANPESDHLTLLNVYTTWKMNRCSDNWCYEHYIQARGMRRAEDVRKQLIRL 1031
Query: 362 MDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLE-RTGSYLTVKDNQVVQLHPSTC 186
MDR+ S + I +AL +G+F VA + G Y T+ +N V +HPS
Sbjct: 1032 MDRYRHPVVSCGRKRE----LILRALCSGYFTNVAKRDSHEGCYKTIVENAPVYMHPSGV 1087
Query: 185 LDHK-PDWVIYNEFVLTTKNYIRTVTDIKPEWLLKIAPQYYELGNFPQ 45
L K +WVIY+E + T+K Y+ TV+ + P+WL+++AP +++ N Q
Sbjct: 1088 LFGKAAEWVIYHELIQTSKEYMHTVSTVNPKWLVEVAPTFFKFANANQ 1135
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 186 bits (454), Expect = 2e-48
Identities = 97/229 (42%), Positives = 140/229 (61%), Gaps = 3/229 (1%)
Frame = -3
Query: 722 ALDDDGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLS-VPQCFVRPNEA 546
AL++ G LT LG MAEFP DP L+K LIAS + C E+LSI +ML F RP +
Sbjct: 820 ALNNRGELTKLGRQMAEFPTDPMLSKSLIASSKYGCVEEVLSIVSMLGEASSLFYRPKDK 879
Query: 545 RKAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPHWCYDNFINYRSLKSGDNVRQQLSR 366
AD+A+ F GDHLTLL++++ + +W +NF+ Y+SL +VR QL+
Sbjct: 880 IMEADKARANFTQPGGDHLTLLHIWNEWVDTDFSYNWARENFLQYKSLCRARDVRDQLAN 939
Query: 365 IMDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERTG-SYLTVKDNQVVQLHPST 189
+ +R ++ + S D I+KA+ G+F A L+R+G SY TVK NQ V +HPS+
Sbjct: 940 LCERVEIELVTNSSESLD---PIKKAITAGYFSNAARLDRSGDSYRTVKSNQTVYIHPSS 996
Query: 188 CL-DHKPDWVIYNEFVLTTKNYIRTVTDIKPEWLLKIAPQYYELGNFPQ 45
+ + KP +IY E VLTTK Y R +T+I+PEWLL+I+P Y++ N +
Sbjct: 997 SVAEKKPKVIIYFELVLTTKEYCRQITEIQPEWLLEISPHYFKPENIEE 1045
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 161 bits (392), Expect = 7e-41
Identities = 84/224 (37%), Positives = 135/224 (60%), Gaps = 3/224 (1%)
Frame = -3
Query: 722 ALDDDGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNEAR 543
ALD+ G LT LG M+ FP+DP L+K++I + ++ C+ EI++I +MLSVP F RP E
Sbjct: 892 ALDNFGKLTTLGKKMSLFPMDPSLSKLIIIAEDYKCTEEIITIVSMLSVPSVFYRPKERA 951
Query: 542 KAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPHWCYDNFINYRSLKSGDNVRQQLSRI 363
+ +D A+ +F + DHL LLN+Y +++N WC +F++ ++LK ++RQQL I
Sbjct: 952 EESDAAREKFNVPESDHLMLLNIYQHWQRNGYSNSWCSKHFLHSKTLKRARDIRQQLVEI 1011
Query: 362 MDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERTGSYLTVKDNQVVQLHPSTC- 186
M + ++ S E S D+ I +R+ L + +F Q A + G Y+ ++ LH ++
Sbjct: 1012 MSK---QKISLESVS-DWDI-VRRVLCSAYFHQAACAKGIGEYVHLRSGMPCHLHVTSSL 1066
Query: 185 --LDHKPDWVIYNEFVLTTKNYIRTVTDIKPEWLLKIAPQYYEL 60
L + PD+VIY+E VLT+K Y+ VT + P WL + YY +
Sbjct: 1067 YGLGYLPDYVIYHELVLTSKEYMNIVTSVDPYWLAEFGGVYYSV 1110
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 158 bits (383), Expect = 9e-40
Identities = 84/223 (37%), Positives = 132/223 (59%), Gaps = 5/223 (2%)
Frame = -3
Query: 722 ALDDDGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNEAR 543
ALDD+G++ DLG M+ PL P LA+ ++A+ HNC +E++ + + LS F+ P E R
Sbjct: 496 ALDDNGHINDLGYQMSLIPLLPSLARAVLAAREHNCLSEVIDVVSCLSTDSMFLFPQEKR 555
Query: 542 KAADEAKMRFAHIDGDHLTLLNVYHAFKQNMED--PHWCYDNFINYRSLKSGDNVRQQLS 369
A EA+++F H +GD LT LN + ++ D WC NFIN R+LK+ ++R+QL
Sbjct: 556 DEAIEARLKFLHSEGDLLTCLNALRQYLESSHDSRKQWCSQNFINRRALKTILDIRKQLR 615
Query: 368 R--IMDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERTGSYLTVKDNQVVQLHP 195
+ D + L +S E S+ N+ + ++G+ A L GSY T+ NQ + +HP
Sbjct: 616 EHCLKDGWEL-NSSPEVNSE----NLLLSFLSGYITNTALLHPDGSYRTIIGNQTISIHP 670
Query: 194 STCL-DHKPDWVIYNEFVLTTKNYIRTVTDIKPEWLLKIAPQY 69
S+ L K + ++Y+E V TTK+Y+R V+ I+ WL +AP Y
Sbjct: 671 SSSLFGKKVEAIMYHELVFTTKSYVRGVSSIRSNWLNAVAPHY 713
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 128 bits (310), Expect = 6e-31
Identities = 74/215 (34%), Positives = 121/215 (56%), Gaps = 3/215 (1%)
Frame = -3
Query: 719 LDDDGNLTD-LGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNEAR 543
LD+ GNLTD LG ++ LD ++K L+ S C++EILSI ++L+ + F P +
Sbjct: 429 LDESGNLTDPLGIQISNSFLDANISKALLTSNQFGCTHEILSIASILTAGEVFYNPTSSS 488
Query: 542 KA-ADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPHWCYDNFINYRSLKSGDNVRQQLSR 366
K A A F +GD +T LNV+ +F N +D WC N++NY++L+ ++R L R
Sbjct: 489 KNDAFVAHSSFFANEGDIITALNVFESFVGNKKDLQWCRKNYLNYQTLRQALDIRTHLVR 548
Query: 365 IMDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERTGSYLTVKDNQVVQLHPSTC 186
+++F++ T+ S D I K L++GF VAHL+ GSY T+ QV S
Sbjct: 549 FLNKFSIP-TAQRLPSSD-CSKILKCLLDGFVRNVAHLQNDGSYKTIGGKQVWLDSSSVL 606
Query: 185 LDHKPDWVIYNEFVLT-TKNYIRTVTDIKPEWLLK 84
+ K W++Y+ V + T+ +++ ++ I+ WL K
Sbjct: 607 HEKKTPWIMYSSAVESETQIFVKNISKIESFWLDK 641
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 51.6 bits (118), Expect = 1e-07
Identities = 26/87 (29%), Positives = 50/87 (57%)
Frame = -3
Query: 722 ALDDDGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNEAR 543
AL ++ LT LG +++ P+D L K+L+ C + C + SI AML++ F + +
Sbjct: 1096 ALSENEKLTKLGKFLSQLPVDANLGKILVLGCFYKCVDAASSIVAMLTIGSPFRKSVDNE 1155
Query: 542 KAADEAKMRFAHIDGDHLTLLNVYHAF 462
+A++A++ FA + L+ +Y+A+
Sbjct: 1156 FSANKARLSFAK-ENTRSDLVLMYYAY 1181
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1183
Score = 51.6 bits (118), Expect = 1e-07
Identities = 26/74 (35%), Positives = 38/74 (51%)
Frame = -3
Query: 722 ALDDDGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNEAR 543
A+D +G LT LG M+ FPL P+ +KMLI H C ++++ + LS+ Q FV
Sbjct: 861 AIDSEGVLTKLGEQMSLFPLSPRFSKMLIIGQQHGCLPYVIALVSALSINQLFVSKQSLL 920
Query: 542 KAADEAKMRFAHID 501
A + R D
Sbjct: 921 YDAHDKNSRSEETD 934
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 47.6 bits (108), Expect = 2e-06
Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 7/146 (4%)
Frame = -3
Query: 722 ALDDDGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNEAR 543
AL +LT LG + P+D +L K+L+ L+ITA+LS F+ +EAR
Sbjct: 1011 ALTVSEDLTGLGEYLVSLPIDLKLGKLLVFGSIFGYLEPALTITAILSTKSPFLGDDEAR 1070
Query: 542 KAADEAKMRFAHIDGDHLTLLNVYHAFKQNME------DPHWCYDNFINYRSLKSGDNVR 381
+ + + GD L VYH + + +E WC + ++Y +L+ R
Sbjct: 1071 EIRSKQSQGW----GDVLADARVYHNWLEILETRGVKKTVQWCEEMHLHYTTLQQIRQNR 1126
Query: 380 QQLSRIMDRFNLKRTSTEFTSK-DYY 306
+LS L T+ + T D+Y
Sbjct: 1127 NELSEAAQLLEL--TTKKLTGNFDWY 1150
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 27.5 bits (58), Expect = 2.1
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -2
Query: 633 QLQSQLFQRDPLHHCHAVSAAVLRETKRGAEGCRRG*NAFCPHRR*P 493
+L +L +RD + CH A E K+ G RG C HR P
Sbjct: 343 ELAEELIKRDKAYVCHCTDA----EIKKARGGEERGPRYACVHRDRP 385
>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 386
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 429 IAPVGILHVLFEGVVYVQ*RKMVTVDVGKTHFSLVGS 539
I P GI H+L EG+ Y Q ++ +D+ F+ +GS
Sbjct: 199 IRPEGIEHLLLEGLAYCQ--ELKVLDLQDNTFTHLGS 233
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 4.7
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Frame = -3
Query: 722 ALDDDGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLS-VPQCFVR---P 555
A D NL + ++ DP+ A+ML+ N S IL + S +P +V+ P
Sbjct: 190 AAHDSKNLKSVEGLVIANDADPKRAQMLVHQINRLNSPNILVVNHDASTMPNIYVKGSSP 249
Query: 554 NEARKAADEAK-MRFAHIDGD 495
++ +E K ++F I D
Sbjct: 250 SDGLNVIEEKKILKFDRILAD 270
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -3
Query: 323 TSKDYYINIRKALVNGFFMQVAHLERTGSYLTVKDNQVVQL 201
T D Y+ + AL+N Q+ + + LT+ +V+QL
Sbjct: 832 TQTDEYLRRKDALINNLQNQLESTKEVANELTITKERVLQL 872
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 470 HAFKQNMEDPHWCYDNFINYRSLKSGDNVRQQLSRIMDRFN 348
HA ++ E +F YRSL G V++ SR+ R N
Sbjct: 2057 HALQEERERVKSLETDFDKYRSLLEGQRVKRSESRLSMRSN 2097
>SPBC691.05c ||SPBP22H7.01c|membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 668
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -3
Query: 398 SGDNVRQQLSRIMDRFNLKRTSTEFT-SKDYYINIRKALVNGFFMQVAHLERTGSYL 231
S ++ LS ++ L ST D I + + N + +++AH +RT S+L
Sbjct: 29 SSKTCQETLSSLLRELQLSHFSTAVRPGSDTSIFVFVKVQNDYLIELAHNDRTSSFL 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,909,321
Number of Sequences: 5004
Number of extensions: 59678
Number of successful extensions: 189
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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