Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10c13r
(724 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15717| Best HMM Match : No HMM Matches (HMM E-Value=.) 190 7e-49
SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.) 180 1e-45
SB_49454| Best HMM Match : No HMM Matches (HMM E-Value=.) 164 6e-41
SB_19311| Best HMM Match : No HMM Matches (HMM E-Value=.) 157 1e-38
SB_44294| Best HMM Match : No HMM Matches (HMM E-Value=.) 109 2e-24
SB_44906| Best HMM Match : No HMM Matches (HMM E-Value=.) 102 3e-22
SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16) 89 3e-18
SB_37839| Best HMM Match : HA2 (HMM E-Value=4e-21) 87 1e-17
SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14) 83 3e-16
SB_38249| Best HMM Match : HA2 (HMM E-Value=1.6e-26) 62 3e-10
SB_54154| Best HMM Match : HA2 (HMM E-Value=3.5e-22) 62 6e-10
SB_47261| Best HMM Match : HA2 (HMM E-Value=5.8e-16) 42 4e-04
SB_15794| Best HMM Match : DUF1605 (HMM E-Value=5.9e-12) 42 4e-04
SB_40812| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 7e-04
SB_23467| Best HMM Match : F5_F8_type_C (HMM E-Value=1.3e-19) 32 0.54
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_33763| Best HMM Match : RVT_1 (HMM E-Value=3.1e-17) 30 1.7
SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_20666| Best HMM Match : Galactosyl_T (HMM E-Value=5.2e-05) 29 5.0
SB_10088| Best HMM Match : VWA (HMM E-Value=0) 28 6.7
>SB_15717| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 273
Score = 190 bits (464), Expect = 7e-49
Identities = 83/109 (76%), Positives = 99/109 (90%)
Frame = -3
Query: 587 MLSVPQCFVRPNEARKAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPHWCYDNFINYR 408
++ +PQ F+RPNEA+KAADE+KM+FAHIDGDHLTLLNVYHA+KQN ED WCYDNFI +R
Sbjct: 164 LVPLPQVFLRPNEAKKAADESKMKFAHIDGDHLTLLNVYHAYKQNHEDTQWCYDNFIQHR 223
Query: 407 SLKSGDNVRQQLSRIMDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQV 261
S+KS DNVR QL+RIMDRFNL+R ST+F S+DYY+NIRKALV+GFFMQV
Sbjct: 224 SMKSADNVRGQLARIMDRFNLQRRSTDFNSRDYYLNIRKALVSGFFMQV 272
Score = 87.4 bits (207), Expect = 1e-17
Identities = 40/51 (78%), Positives = 47/51 (92%)
Frame = -3
Query: 722 ALDDDGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQ 570
ALDD+G+LT+LG++MAEFPLDPQLAKM+IASC NCSNEILSIT+MLS Q
Sbjct: 17 ALDDNGDLTELGSMMAEFPLDPQLAKMVIASCEFNCSNEILSITSMLSARQ 67
>SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1303
Score = 180 bits (438), Expect = 1e-45
Identities = 92/204 (45%), Positives = 132/204 (64%), Gaps = 1/204 (0%)
Frame = -3
Query: 722 ALDDDGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNEAR 543
ALD++G LT LG MAEFPL+PQL+KMLI S + CS+EIL+I +MLSV F RP + +
Sbjct: 717 ALDNEGLLTRLGRRMAEFPLEPQLSKMLIQSVHLGCSDEILTIVSMLSVQNVFYRPKDKQ 776
Query: 542 KAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPHWCYDNFINYRSLKSGDNVRQQLSRI 363
AD+ K +F +GDHLTLL VY+++K N WC++NF+ RSL+ ++R+Q+ ++
Sbjct: 777 ALADQKKAKFHQPEGDHLTLLAVYNSWKNNKFSNAWCFENFVQARSLRRAQDIRKQIHKL 836
Query: 362 MDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERTGSYLTVKDNQVVQLHPSTCL 183
K T+ ++KA+ +GFF A + Y TV DNQVV +HPS+ L
Sbjct: 837 DVVSCGKHTA----------RVQKAITSGFFRNAARKDPQEGYRTVVDNQVVYIHPSSAL 886
Query: 182 -DHKPDWVIYNEFVLTTKNYIRTV 114
+ +P+WV+Y+E VLTTK Y+R V
Sbjct: 887 FNRQPEWVVYHELVLTTKEYMREV 910
>SB_49454| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 696
Score = 164 bits (399), Expect = 6e-41
Identities = 87/220 (39%), Positives = 132/220 (60%), Gaps = 1/220 (0%)
Frame = -3
Query: 719 LDDDGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNEARK 540
++ D LT LG MA+FPL+P+LAK+++AS CS EIL++ A+LSV P R
Sbjct: 468 INGDYKLTSLGQKMAQFPLEPRLAKVILASETLGCSEEILTVVALLSVDSITYTPQSKRD 527
Query: 539 AADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPHWCYDNFINYRSLKSGDNVRQQLSRIM 360
A + + +F +GD +TLLN+Y A+KQ + WC ++FIN R +K ++R+QL I
Sbjct: 528 HALKVRKKFLSSEGDQITLLNIYRAYKQCGMNKSWCAEHFINTRVMKLVMDIRKQLREIC 587
Query: 359 DRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERTGSYLTVKDNQVVQLHPSTCL- 183
R +K S KD +R+ L G FM A L+ G+Y T+ + V +HPS+ L
Sbjct: 588 IRLEIKLQS---CGKD-SATLRQCLCRGLFMNSAELQLDGTYQTLNHRETVAIHPSSSLF 643
Query: 182 DHKPDWVIYNEFVLTTKNYIRTVTDIKPEWLLKIAPQYYE 63
KP +V+YNE V T+K Y+R V+ + +WLL+ AP +++
Sbjct: 644 MSKPAYVVYNELVHTSKCYMRDVSVVSCDWLLEAAPGFFQ 683
>SB_19311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 86
Score = 157 bits (380), Expect = 1e-38
Identities = 68/86 (79%), Positives = 78/86 (90%)
Frame = -3
Query: 521 MRFAHIDGDHLTLLNVYHAFKQNMEDPHWCYDNFINYRSLKSGDNVRQQLSRIMDRFNLK 342
M+FAHIDGDHLTLLNVYHA+KQN ED WCYDNFI +RS+KS DNVR QL+RIMDRFNL+
Sbjct: 1 MKFAHIDGDHLTLLNVYHAYKQNHEDTQWCYDNFIQHRSMKSADNVRGQLARIMDRFNLQ 60
Query: 341 RTSTEFTSKDYYINIRKALVNGFFMQ 264
R ST+F S+DYY+NIRKALV+GFFMQ
Sbjct: 61 RRSTDFNSRDYYLNIRKALVSGFFMQ 86
>SB_44294| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 64
Score = 109 bits (262), Expect = 2e-24
Identities = 47/62 (75%), Positives = 55/62 (88%)
Frame = -3
Query: 449 EDPHWCYDNFINYRSLKSGDNVRQQLSRIMDRFNLKRTSTEFTSKDYYINIRKALVNGFF 270
ED WCYDNFI +RS+KS DNVR QL+RIMDRFNL+R ST+F S+DYY+NIRKALV+GFF
Sbjct: 3 EDTQWCYDNFIQHRSMKSADNVRGQLARIMDRFNLQRRSTDFNSRDYYLNIRKALVSGFF 62
Query: 269 MQ 264
MQ
Sbjct: 63 MQ 64
>SB_44906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 102 bits (245), Expect = 3e-22
Identities = 58/139 (41%), Positives = 80/139 (57%), Gaps = 3/139 (2%)
Frame = -3
Query: 611 NEILSITAMLSVPQC-FVRPNEARKAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPHW 435
N +L+I AMLSV F RP + AD A+ F GDHLTLLNVY + + W
Sbjct: 492 NRMLTIIAMLSVNNAIFYRPKDKIVHADNARTNFFRPGGDHLTLLNVYDQWAETDYSTQW 551
Query: 434 CYDNFINYRSLKSGDNVRQQLSRIMDRFNLKRTST--EFTSKDYYINIRKALVNGFFMQV 261
CY+NFI +RS+K +VR+QL +++R ++ +S +FT+ IRKA+ GFF
Sbjct: 552 CYENFIQHRSMKRARDVREQLEGLIERAEIEMSSNPGDFTA------IRKAVTAGFFYHT 605
Query: 260 AHLERTGSYLTVKDNQVVQ 204
A L R G Y TVK Q+ +
Sbjct: 606 ARLGRGGQYRTVKHQQMAR 624
>SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)
Length = 2352
Score = 89.0 bits (211), Expect = 3e-18
Identities = 65/226 (28%), Positives = 118/226 (52%), Gaps = 18/226 (7%)
Frame = -3
Query: 710 DGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSV-PQCFVR--PNEARK 540
DG+LT+LG +++ PL+P+L ++L + E L + ++ +V F R + +K
Sbjct: 1097 DGSLTELGRKLSKVPLEPRLGRLLFEGIDSQVGLECLVLCSVATVNGSVFFRMGTEDEKK 1156
Query: 539 AADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDP----HWCYDNFINYRSLKSGDNVRQQL 372
AD K F +GD LTLL VY + EDP WC++ +N ++L+ ++ + L
Sbjct: 1157 EADMHKFEFCQSEGDFLTLLAVYKEWWN--EDPRDRGRWCFEKSLNAKALRLAEDTMRDL 1214
Query: 371 SRIMDR-FNLKRTSTEFTS--KDYYIN--IRKALVNGFFMQVAHL---ERTGSYLTVKDN 216
++ ++K T S D +N ++K +++ F + R G Y + D
Sbjct: 1215 KFSLEHDLSIKNARTWKWSPLDDAVVNETLQKIVMSCFSENLCVFSGHSRVG-YKNLYDG 1273
Query: 215 QVVQLHPSTCLDH---KPDWVIYNEFVLTTKNYIRTVTDIKPEWLL 87
+ VQLHPS+ ++ +P +++Y + + TT+++I VT I+ WLL
Sbjct: 1274 EYVQLHPSSAINFIGTEPKFLVYEKTLRTTQDFIINVTPIEEAWLL 1319
>SB_37839| Best HMM Match : HA2 (HMM E-Value=4e-21)
Length = 422
Score = 87.4 bits (207), Expect = 1e-17
Identities = 40/51 (78%), Positives = 47/51 (92%)
Frame = -3
Query: 722 ALDDDGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQ 570
ALDD+G+LT+LG++MAEFPLDPQLAKM+IASC NCSNEILSIT+MLS Q
Sbjct: 288 ALDDNGDLTELGSMMAEFPLDPQLAKMVIASCEFNCSNEILSITSMLSARQ 338
>SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)
Length = 1197
Score = 82.6 bits (195), Expect = 3e-16
Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 3/184 (1%)
Frame = -3
Query: 602 LSITAMLSVPQCFVRPNEARKAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPHWCYDN 423
++I +MLSVP F RP + +D A+ +FA + DHLT LNVY +K N
Sbjct: 953 MTIVSMLSVPAIFFRPKGREEDSDAAREKFAVPESDHLTYLNVYLQWKTN---------K 1003
Query: 422 FINYRSLKSGDNVRQQLSRIMDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERT 243
++ L S + + L R L T + Y ++ + +
Sbjct: 1004 YVIREGLSS-ETLLVWLQRKNRTHGLSATIYDLNFMIQYGGFNSTMLGDISVISDRRKGI 1062
Query: 242 GSYLTVKDNQVVQLHPSTCL---DHKPDWVIYNEFVLTTKNYIRTVTDIKPEWLLKIAPQ 72
G Y+ ++ LHP++ L + PD+++Y+E V+T+K Y++ VT + WL ++ P
Sbjct: 1063 GEYVNMRTGMPCHLHPTSALFGMGYTPDYIVYHELVMTSKEYMQCVTAVDGNWLAELGPM 1122
Query: 71 YYEL 60
+Y +
Sbjct: 1123 FYSV 1126
>SB_38249| Best HMM Match : HA2 (HMM E-Value=1.6e-26)
Length = 355
Score = 62.5 bits (145), Expect = 3e-10
Identities = 29/88 (32%), Positives = 51/88 (57%)
Frame = -3
Query: 722 ALDDDGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNEAR 543
ALD + NLT LG ++A+ P++P+L KM+I C +C + + +I A S P+ F P++ R
Sbjct: 235 ALDTNENLTPLGYMLAKLPIEPRLGKMVILGCIFHCGDAMATIAASTSFPEPFETPSDRR 294
Query: 542 KAADEAKMRFAHIDGDHLTLLNVYHAFK 459
+ K DH+ +L+ + A++
Sbjct: 295 RLGWVHKKFSGTRHSDHIAMLSAFQAWE 322
>SB_54154| Best HMM Match : HA2 (HMM E-Value=3.5e-22)
Length = 354
Score = 61.7 bits (143), Expect = 6e-10
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = -3
Query: 722 ALDDDGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNEAR 543
ALD NLT LG +A P+DP++ KM++ +C + +L++ + L + FV P + +
Sbjct: 269 ALDTKENLTPLGYHLASLPVDPRIGKMILFGAIVSCLDPVLTVASTLGFREPFVYPLDKK 328
Query: 542 KAADEAKMRFA-HIDGDHLTLLNVY 471
K AD+ + R A DH+ +LN Y
Sbjct: 329 KLADKVRTRLAGDSHSDHIAVLNAY 353
>SB_47261| Best HMM Match : HA2 (HMM E-Value=5.8e-16)
Length = 351
Score = 42.3 bits (95), Expect = 4e-04
Identities = 31/142 (21%), Positives = 59/142 (41%), Gaps = 5/142 (3%)
Frame = -3
Query: 722 ALDDDGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNEAR 543
AL +D +T +G +++ P+D + KML+ + ++ ++ I A LSV + R +
Sbjct: 123 ALTEDEAITPVGQMLSRLPVDVVIGKMLLMGSVFHVTDPVMIIAAGLSVQSPWTRRLDHD 182
Query: 542 KAADEAKMRFAHIDGDHLTLLNVYHAF-----KQNMEDPHWCYDNFINYRSLKSGDNVRQ 378
+ GD TLLN Y + +Q WC + + +++
Sbjct: 183 PDVMALRKELESDHGDPFTLLNAYDEWIQVKSRQGSGSKKWCRRRGLEEQRFYEMSKLKR 242
Query: 377 QLSRIMDRFNLKRTSTEFTSKD 312
Q ++ L + T+ S D
Sbjct: 243 QFEDLLVDHGLIQRETKDDSDD 264
>SB_15794| Best HMM Match : DUF1605 (HMM E-Value=5.9e-12)
Length = 655
Score = 42.3 bits (95), Expect = 4e-04
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Frame = -3
Query: 707 GNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNEA--RKAA 534
GN +A+ P++P+L KM++ S C + ++++ L+ FV P A ++AA
Sbjct: 78 GNTKRYSRHLADLPVEPRLGKMILYSVVLKCLDPVITVACALAYRDPFVLPMYAAEKRAA 137
Query: 533 DEAKMRFAHID--GDHLTLLNVYHA 465
AK RF ID DHL + + A
Sbjct: 138 AVAKRRFI-IDQYSDHLLFVKAFRA 161
>SB_40812| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1168
Score = 41.5 bits (93), Expect = 7e-04
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Frame = -3
Query: 701 LTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRP-NEARKAADEA 525
++ LG+ MA+FP+ P+ AKML +C I++I A L+V + FV EA + ++
Sbjct: 771 ISPLGSAMAKFPVLPRYAKMLCLGHQESCMEFIIAIIAALTVKEIFVDDIKEAGFSGNKE 830
Query: 524 KMRFAHI 504
+++ H+
Sbjct: 831 ELQKHHV 837
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = -3
Query: 239 SYLTVKDNQVVQLHPSTCL-DHKPDWVIYNEFVLTTKNYIRTVTDIKPEWLLKIAP 75
+Y+ + V +HP + L P +V+Y E V T+K +++ VT I+ EWL + P
Sbjct: 957 AYICTAVEEPVFIHPKSALFSVLPQYVVYQEVVETSKLFLKGVTTIEVEWLPVLVP 1012
>SB_23467| Best HMM Match : F5_F8_type_C (HMM E-Value=1.3e-19)
Length = 162
Score = 31.9 bits (69), Expect = 0.54
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -2
Query: 249 EDGQLPDGEGQPGGTAAPFHVPGPQARLGH 160
ED ++PDG G A+P+H+P RLGH
Sbjct: 9 EDFRVPDGAFTSSGVASPYHLP-HYGRLGH 37
>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Frame = -3
Query: 584 LSVPQCFVRPNEARKAADEAKMRFAHIDGDHLT--------LLNVYHAFKQNMEDPHW 435
LS F RP+ A + +K IDG+H+T + N YH FK N ++ H+
Sbjct: 288 LSKSMTFNRPSTAEAIVEPSKEENQVIDGNHVTRAIAGMTKVSNSYHEFKYNPKNSHF 345
>SB_33763| Best HMM Match : RVT_1 (HMM E-Value=3.1e-17)
Length = 271
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -3
Query: 710 DGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSI 594
DG LT +G V+ P+D ++ K+++ C E + I
Sbjct: 231 DGELTFIGKVLGTLPVDVRIGKLMVLGYVFGCLEECIVI 269
>SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = -3
Query: 551 EARKAADEAKMRFAHIDGDHLTLLNVYHAFK--QNMEDPHWCYDNFINYRS 405
EARK+++E K+ F + LL+V+ +FK +E P D+ + Y S
Sbjct: 206 EARKSSEEKKLFFVGARNGEVKLLDVHDSFKLHTTLECPVDVLDSLLLYSS 256
>SB_20666| Best HMM Match : Galactosyl_T (HMM E-Value=5.2e-05)
Length = 421
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +3
Query: 138 GEHELVVYDPVGLVVQARGRVQLYHLVVLHRQVAARPLEVRHLHEKSI 281
G ++ D V + Q GR++ Y + HR++ ARP E + + + I
Sbjct: 301 GAGNMLSADLVKWLAQNSGRLKHYQNITRHREMRARPFESTNEYNQDI 348
>SB_10088| Best HMM Match : VWA (HMM E-Value=0)
Length = 307
Score = 28.3 bits (60), Expect = 6.7
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -3
Query: 347 LKRTSTEFTSKDY-YINIRKALVNGFFMQVAHLERTGSYLTVKDNQVVQLHP 195
+ +T EF DY +IN KA V+ F Q RTG LT +V + P
Sbjct: 176 IPKTKIEFDLDDYDHINDIKAAVDAFSHQHGGQTRTGEALTFTLEEVFKKAP 227
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,135,849
Number of Sequences: 59808
Number of extensions: 511542
Number of successful extensions: 1533
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1525
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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