Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c13r
         (724 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          24   1.3  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   2.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.9  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   3.9  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   5.1  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   6.7  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   6.7  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   8.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   8.9  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          21   8.9  

>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -2

Query: 564 RETKRGAEGCRRG*NAFCPHRR*PSYATERIP 469
           RET R     RRG      HR  PS+  E+IP
Sbjct: 308 RETSRERSRDRRGRGRSREHRIIPSHYIEQIP 339


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 63  LVVLGSDLQQPFRLDISDSPNVVLG 137
           LV LG  L  P R+DI    N +LG
Sbjct: 270 LVGLGFSLNGPDRIDILSQINGILG 294


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 650 PAVGRGGTPPSQHPGQ 697
           P  G  G PPSQ+P Q
Sbjct: 47  PPGGPPGAPPSQNPSQ 62


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -3

Query: 218 NQVVQLHPSTCLDHKPDWVIYNEFVLTTKNYIRTVTDIKPEWL 90
           N+V+ +HP   +  K DW I +  +L T+  I+    + P  L
Sbjct: 237 NKVI-IHPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGPACL 278


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 3/19 (15%)
 Frame = +3

Query: 315 FACEFCACSFQIK---SVH 362
           + CE+C+ SF +K   SVH
Sbjct: 120 YQCEYCSKSFSVKENLSVH 138


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -3

Query: 689 GAVMAEFPLDPQLAKMLIASCNHNCSNEIL 600
           G  + +FP D Q   ++  S  HN  + +L
Sbjct: 143 GLRLEKFPFDVQECPLIFESWTHNVLDMVL 172


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -3

Query: 392 DNVRQQLSRIMDRFNLK 342
           +NV Q +SRI+D ++++
Sbjct: 35  ENVTQTISRILDGYDIR 51


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -3

Query: 488 TLLNVYHAFKQNM 450
           T+L+ YH +K+N+
Sbjct: 423 TILDYYHKYKENL 435


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -3

Query: 242 GSYLTVKDNQVVQLHPSTCLDHKPDWVIYN 153
           GS + +  N      P  CL +  D++IY+
Sbjct: 318 GSPIVLGLNNTPDRTPDQCLFYNTDFIIYS 347


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -3

Query: 488 TLLNVYHAFKQNM 450
           T+L+ YH +K+N+
Sbjct: 423 TILDYYHKYKENL 435


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -3

Query: 488 TLLNVYHAFKQNM 450
           T+L+ YH +K+N+
Sbjct: 49  TILDYYHKYKENL 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,695
Number of Sequences: 438
Number of extensions: 4225
Number of successful extensions: 28
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)