Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10c13r
(724 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g62310.1 68416.m07000 RNA helicase, putative similar to SP|P5... 390 e-109
At2g47250.1 68415.m05900 RNA helicase, putative similar to SP|P5... 387 e-108
At5g14900.1 68418.m01748 helicase associated (HA2) domain-contai... 343 1e-94
At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative si... 205 3e-53
At2g35340.1 68415.m04333 RNA helicase, putative similar to ATP-d... 202 2e-52
At1g32490.1 68414.m04009 RNA helicase, putative similar to ATP-d... 201 3e-52
At4g18465.1 68417.m02740 RNA helicase, putative similar to SP|Q1... 183 1e-46
At4g16680.1 68417.m02519 RNA helicase, putative similar to SP|Q1... 182 3e-46
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-... 174 6e-44
At1g26370.1 68414.m03217 RNA helicase, putative similar to SP|Q1... 133 1e-31
At1g27900.1 68414.m03419 RNA helicase, putative similar to SP|Q1... 118 5e-27
At1g48650.1 68414.m05445 helicase domain-containing protein cont... 100 1e-21
At2g01130.1 68415.m00021 helicase domain-containing protein simi... 97 8e-21
At5g04895.1 68418.m00514 helicase domain-containing protein simi... 93 1e-19
At2g35920.1 68415.m04409 helicase domain-containing protein simi... 86 2e-17
At4g01020.1 68417.m00137 helicase domain-containing protein / IB... 75 4e-14
At5g10370.1 68418.m01203 helicase domain-containing protein / IB... 70 1e-12
At1g33390.1 68414.m04133 helicase domain-containing protein simi... 56 3e-08
At2g30800.1 68415.m03755 DEIH-box RNA/DNA helicase, putative sim... 50 2e-06
At1g58060.1 68414.m06580 helicase domain-containing protein cont... 48 5e-06
At1g06670.1 68414.m00707 DEIH-box RNA/DNA helicase identical to ... 44 1e-04
At1g58050.1 68414.m06579 helicase domain-containing protein cont... 39 0.004
At2g31770.1 68415.m03879 zinc finger (C3HC4-type RING finger) fa... 31 0.58
At2g31760.1 68415.m03878 zinc finger protein-related contains lo... 30 1.8
At3g61530.2 68416.m06892 ketopantoate hydroxymethyltransferase f... 29 3.1
At3g61530.1 68416.m06891 ketopantoate hydroxymethyltransferase f... 29 3.1
At1g17550.1 68414.m02161 protein phosphatase 2C-related / PP2C-r... 28 5.5
>At3g62310.1 68416.m07000 RNA helicase, putative similar to SP|P53131
Pre-mRNA splicing factor RNA helicase PRP43 (Helicase
JA1) {Saccharomyces cerevisiae}; contains Pfam profiles
PF04408: Helicase associated domain (HA2), PF00271:
Helicase conserved C-terminal domain
Length = 726
Score = 390 bits (959), Expect = e-109
Identities = 172/227 (75%), Positives = 198/227 (87%)
Frame = -3
Query: 722 ALDDDGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNEAR 543
ALDDDGNLT G +M+EFPLDPQ+AKMLI S NCSNEILS++AMLSVP CF+RP EA+
Sbjct: 475 ALDDDGNLTKTGEIMSEFPLDPQMAKMLIVSPEFNCSNEILSVSAMLSVPNCFIRPREAQ 534
Query: 542 KAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPHWCYDNFINYRSLKSGDNVRQQLSRI 363
KAADEAK RF HI+GDHLTLLNVYHAFKQN EDP+WCY+NFIN R++KS DNVRQQL RI
Sbjct: 535 KAADEAKARFGHIEGDHLTLLNVYHAFKQNNEDPNWCYENFINNRAMKSADNVRQQLVRI 594
Query: 362 MDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERTGSYLTVKDNQVVQLHPSTCL 183
M RFNLK ST+F S+DYYINIRKA++ G+FMQVAHLERTG YLTVKDNQVV LHPS CL
Sbjct: 595 MSRFNLKMCSTDFNSRDYYINIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCL 654
Query: 182 DHKPDWVIYNEFVLTTKNYIRTVTDIKPEWLLKIAPQYYELGNFPQC 42
DHKP+WVIYNE+VLT++N+IRTVTDI+ EWL+ +A YY+L NFP C
Sbjct: 655 DHKPEWVIYNEYVLTSRNFIRTVTDIRGEWLVDVASHYYDLSNFPNC 701
>At2g47250.1 68415.m05900 RNA helicase, putative similar to SP|P53131
Pre-mRNA splicing factor RNA helicase PRP43 (Helicase
JA1) {Saccharomyces cerevisiae}; contains Pfam profiles
PF04408: Helicase associated domain (HA2), PF00271:
Helicase conserved C-terminal domain
Length = 729
Score = 387 bits (952), Expect = e-108
Identities = 169/227 (74%), Positives = 198/227 (87%)
Frame = -3
Query: 722 ALDDDGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNEAR 543
ALDD+GNLT G +M+EFPLDPQ++KMLI S NCSNEILS++AMLSVP CFVRP EA+
Sbjct: 479 ALDDEGNLTKTGEIMSEFPLDPQMSKMLIVSPEFNCSNEILSVSAMLSVPNCFVRPREAQ 538
Query: 542 KAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPHWCYDNFINYRSLKSGDNVRQQLSRI 363
KAADEAK RF HIDGDHLTLLNVYHA+KQN EDP+WC++NF+N R++KS DNVRQQL RI
Sbjct: 539 KAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPNWCFENFVNNRAMKSADNVRQQLVRI 598
Query: 362 MDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERTGSYLTVKDNQVVQLHPSTCL 183
M RFNLK ST+F S+DYY+NIRKA++ G+FMQVAHLERTG YLTVKDNQVV LHPS CL
Sbjct: 599 MSRFNLKMCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCL 658
Query: 182 DHKPDWVIYNEFVLTTKNYIRTVTDIKPEWLLKIAPQYYELGNFPQC 42
DHKP+WVIYNE+VLTT+N+IRTVTDI+ EWL+ +A YY+L NFP C
Sbjct: 659 DHKPEWVIYNEYVLTTRNFIRTVTDIRGEWLVDVAQHYYDLSNFPNC 705
>At5g14900.1 68418.m01748 helicase associated (HA2)
domain-containing protein similar to SP|P53131 Pre-mRNA
splicing factor RNA helicase PRP43 (Helicase JA1)
{Saccharomyces cerevisiae}; contains Pfam profile
PF04408: Helicase associated domain (HA2)
Length = 301
Score = 343 bits (842), Expect = 1e-94
Identities = 157/228 (68%), Positives = 188/228 (82%), Gaps = 3/228 (1%)
Frame = -3
Query: 722 ALDDDGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPN-EA 546
ALDDD NLT G +M+EFPLDPQ+AKMLI S NCSNEILSI+AMLSVP CF+RP EA
Sbjct: 45 ALDDDCNLTKTGEMMSEFPLDPQMAKMLIVSPQFNCSNEILSISAMLSVPNCFIRPRGEA 104
Query: 545 RKAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPHWCYDNFINYRSLKSGDNVRQQLSR 366
+KAADEAK FAHIDGDHLTLLN++HAF QN +DP+WC FINYR++KS +VR+QL R
Sbjct: 105 QKAADEAKSSFAHIDGDHLTLLNLFHAFLQNNQDPNWCCTKFINYRAMKSAVSVREQLVR 164
Query: 365 IMDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERTGSYLTV--KDNQVVQLHPS 192
IM RF +K S +F S+DYY+NIRKAL+ G+FMQVAHLERTG YLT KD+QVV LHPS
Sbjct: 165 IMLRFQIKLCSPDFNSRDYYVNIRKALLAGYFMQVAHLERTGHYLTFRDKDDQVVHLHPS 224
Query: 191 TCLDHKPDWVIYNEFVLTTKNYIRTVTDIKPEWLLKIAPQYYELGNFP 48
CLDHKP+WV+YNE+V T++N+IRTVT I+ EWL+ +AP YY+L NFP
Sbjct: 225 NCLDHKPEWVVYNEYVFTSRNFIRTVTHIRGEWLVDVAPHYYKLANFP 272
>At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative similar
to SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain, PF00575:
S1 RNA binding domain
Length = 1168
Score = 205 bits (500), Expect = 3e-53
Identities = 102/225 (45%), Positives = 149/225 (66%), Gaps = 2/225 (0%)
Frame = -3
Query: 722 ALDDDGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNEAR 543
ALD++G LT LG MAEFPL+P L+KML+AS + CS+EIL++ AM+ F RP E +
Sbjct: 916 ALDEEGLLTKLGRKMAEFPLEPPLSKMLLASVDLGCSDEILTMIAMIQTGNIFYRPREKQ 975
Query: 542 KAADEAKMRFAHIDGDHLTLLNVYHAFK-QNMEDPHWCYDNFINYRSLKSGDNVRQQLSR 366
AD+ + +F +GDHLTLL VY A+K +N P WC++NFI RSL+ +VR+QL
Sbjct: 976 AQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGP-WCFENFIQSRSLRRAQDVRKQLLS 1034
Query: 365 IMDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERTGSYLTVKDNQVVQLHPSTC 186
IMD++ L T+ + IRKA+ GFF A + Y T+ +NQ V +HPS+
Sbjct: 1035 IMDKYKL----DVVTAGKNFTKIRKAITAGFFFHGARKDPQEGYRTLVENQPVYIHPSSA 1090
Query: 185 L-DHKPDWVIYNEFVLTTKNYIRTVTDIKPEWLLKIAPQYYELGN 54
L +PDWVIY++ V+TTK Y+R VT I P+WL+++AP+++++ +
Sbjct: 1091 LFQRQPDWVIYHDLVMTTKEYMREVTVIDPKWLVELAPRFFKVSD 1135
>At2g35340.1 68415.m04333 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1110
Score = 202 bits (493), Expect = 2e-52
Identities = 100/225 (44%), Positives = 145/225 (64%), Gaps = 4/225 (1%)
Frame = -3
Query: 722 ALDDDGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSV-PQCFVRPNEA 546
AL+ G LT G MAEFPLDP L+KM++ S + CS+EI+SI AMLS+ P F RP +
Sbjct: 871 ALNQLGELTKAGRRMAEFPLDPMLSKMIVVSDKYKCSDEIISIAAMLSIGPSIFYRPKDK 930
Query: 545 RKAADEAKMRFAHID--GDHLTLLNVYHAFKQNMEDPHWCYDNFINYRSLKSGDNVRQQL 372
+ AD A F H+ GDH+ L +Y+++K+ WCY+N+I RS+K ++R QL
Sbjct: 931 QVHADNAMKNF-HVGNVGDHIAFLKIYNSWKETNYSTQWCYENYIQVRSMKRARDIRDQL 989
Query: 371 SRIMDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERTGSYLTVKDNQVVQLHPS 192
+++R + S+ D +IRK++V GFF A L++ GSY TVK Q V +HP+
Sbjct: 990 EGLLERVEID-VSSNANELD---SIRKSIVAGFFPHTAKLQKNGSYRTVKHPQTVHIHPA 1045
Query: 191 TCLDHK-PDWVIYNEFVLTTKNYIRTVTDIKPEWLLKIAPQYYEL 60
+ L P WV+Y++ VLT+K Y+R VT++KPEWL++IAP YY+L
Sbjct: 1046 SGLSQVLPRWVVYHQLVLTSKEYMRQVTELKPEWLIEIAPHYYQL 1090
>At1g32490.1 68414.m04009 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1044
Score = 201 bits (491), Expect = 3e-52
Identities = 100/224 (44%), Positives = 145/224 (64%), Gaps = 3/224 (1%)
Frame = -3
Query: 722 ALDDDGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVP-QCFVRPNEA 546
AL+ G LT G MAEFPLDP L+KM++ S + CS+EI+SI AMLS+ F RP +
Sbjct: 805 ALNKLGELTKAGRRMAEFPLDPMLSKMIVVSDKYKCSDEIISIAAMLSIGGSIFYRPKDK 864
Query: 545 RKAADEAKMRFAHID-GDHLTLLNVYHAFKQNMEDPHWCYDNFINYRSLKSGDNVRQQLS 369
+ AD A+M F + GDH+ LL VY ++K+ WCY+N+I RS+K ++R QL
Sbjct: 865 QVHADNARMNFHTGNVGDHIALLKVYSSWKETNFSTQWCYENYIQVRSMKRARDIRDQLE 924
Query: 368 RIMDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERTGSYLTVKDNQVVQLHPST 189
+++R + S+ D ++RK++V GFF A L++ GSY TVK Q V +HP++
Sbjct: 925 GLLERVEID-ISSNLNELD---SVRKSIVAGFFPHTAKLQKNGSYRTVKHPQTVHIHPNS 980
Query: 188 CLDHK-PDWVIYNEFVLTTKNYIRTVTDIKPEWLLKIAPQYYEL 60
L P WV+Y+E VLT+K Y+R VT++KPEWL+++AP YY+L
Sbjct: 981 GLSQVLPRWVVYHELVLTSKEYMRQVTELKPEWLIELAPHYYQL 1024
>At4g18465.1 68417.m02740 RNA helicase, putative similar to SP|Q14562
ATP-dependent helicase DDX8 (RNA helicase HRH1) (DEAH-box
protein 8) {Homo sapiens}; contains Pfam profiles
PF04408: Helicase associated domain (HA2), PF00271:
Helicase conserved C-terminal domain
Length = 704
Score = 183 bits (445), Expect = 1e-46
Identities = 91/223 (40%), Positives = 131/223 (58%), Gaps = 4/223 (1%)
Frame = -3
Query: 719 LDDDGNLTD-LGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNEAR 543
LDDD LT G +AE PLDP ++KM++AS CS+EI++I A+LSV ++ +
Sbjct: 478 LDDDAKLTSPTGFQVAELPLDPMISKMILASSELGCSHEIITIAAVLSVQSVWIIARGVQ 537
Query: 542 KAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPHWCYDNFINYRSLKSGDNVRQQLSRI 363
K DEAK+RFA +GDH+T LNVY F ++ + WCY NF+NY+S+K +R QL RI
Sbjct: 538 KEQDEAKLRFAAAEGDHVTFLNVYKGFLESKKPTQWCYKNFLNYQSMKKVVEIRDQLKRI 597
Query: 362 MDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLE--RTGSYLTVKDNQVVQLHPST 189
R + S + + +RKA+ GFF LE G Y T++ ++ V +HPS+
Sbjct: 598 ARRLGITLKSCDGDME----AVRKAVTAGFFANACRLEPHSNGVYKTIRGSEEVYIHPSS 653
Query: 188 CLDH-KPDWVIYNEFVLTTKNYIRTVTDIKPEWLLKIAPQYYE 63
L P WV+Y V T + Y+R V I P WL ++AP +Y+
Sbjct: 654 VLFRVNPKWVVYQSIVSTERQYMRNVVTINPSWLTEVAPHFYQ 696
>At4g16680.1 68417.m02519 RNA helicase, putative similar to SP|Q14562
ATP-dependent helicase DDX8 (RNA helicase HRH1) (DEAH-box
protein 8) {Homo sapiens}; contains Pfam profiles
PF04408: Helicase associated domain (HA2), PF00271:
Helicase conserved C-terminal domain
Length = 883
Score = 182 bits (442), Expect = 3e-46
Identities = 95/227 (41%), Positives = 142/227 (62%), Gaps = 6/227 (2%)
Frame = -3
Query: 722 ALDDDGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQC-FVRPNEA 546
ALD+ G +T +G M EFP+DP L+KM++ S + CS EI++I AMLSV F RP
Sbjct: 619 ALDEIGEITKVGERMVEFPVDPMLSKMIVGSEKYKCSKEIITIAAMLSVGNSVFYRPKNQ 678
Query: 545 RKAADEAKMRFAHID---GDHLTLLNVYHAFKQNMEDPHWCYDNFINYRSLKSGDNVRQQ 375
+ AD+A+M F GDH+ LL VY+++K+ WC + FI +S+K ++R Q
Sbjct: 679 QVFADKARMDFYEDTENVGDHIALLRVYNSWKEENYSTQWCCEKFIQSKSMKRARDIRDQ 738
Query: 374 LSRIMDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERTGSYLTVKDNQVVQLHP 195
L ++++ ++ TS D I+KA++ GFF A L++ GSY VK+ Q V +HP
Sbjct: 739 LLGLLNKIGVELTSNP-NDLDA---IKKAILAGFFPHSAKLQKNGSYRRVKEPQTVYVHP 794
Query: 194 STCL-DHKPD-WVIYNEFVLTTKNYIRTVTDIKPEWLLKIAPQYYEL 60
++ L P W++Y+E VLTTK Y+R T++KPEWL++IAP YY+L
Sbjct: 795 NSGLFGASPSKWLVYHELVLTTKEYMRHTTEMKPEWLIEIAPHYYKL 841
>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1226
Score = 174 bits (423), Expect = 6e-44
Identities = 86/224 (38%), Positives = 134/224 (59%), Gaps = 3/224 (1%)
Frame = -3
Query: 722 ALDDDGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNEAR 543
AL++ G LTDLG M EFPLDP LAKML+ +C +E+L+I +MLSVP F RP E
Sbjct: 934 ALNNVGGLTDLGWKMVEFPLDPPLAKMLLMGERLDCIDEVLTIVSMLSVPSVFFRPKERA 993
Query: 542 KAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPHWCYDNFINYRSLKSGDNVRQQLSRI 363
+ +D A+ +F + DHLTLLNVY +K++ WC D+++ + L+ VR QL I
Sbjct: 994 EESDAAREKFFVPESDHLTLLNVYQQWKEHDYRGDWCNDHYLQVKGLRKAREVRSQLLDI 1053
Query: 362 MDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERTGSYLTVKDNQVVQLHPSTC- 186
+ + ++ S D+ I +RKA+ + +F A L+ G Y+ + LHPS+
Sbjct: 1054 LKQLKIELRS---CGPDWDI-VRKAICSAYFHNSARLKGVGEYVNCRTGMPCHLHPSSAL 1109
Query: 185 --LDHKPDWVIYNEFVLTTKNYIRTVTDIKPEWLLKIAPQYYEL 60
L + PD+V+Y+E +LTTK Y++ T ++P WL ++ P ++ +
Sbjct: 1110 YGLGYTPDYVVYHELILTTKEYMQCATSVEPHWLAELGPMFFSV 1153
>At1g26370.1 68414.m03217 RNA helicase, putative similar to SP|Q14562
ATP-dependent helicase DDX8 (RNA helicase HRH1) (DEAH-box
protein 8) {Homo sapiens}; contains Pfam profiles
PF04408: Helicase associated domain (HA2), PF00271:
Helicase conserved C-terminal domain
Length = 717
Score = 133 bits (322), Expect = 1e-31
Identities = 78/236 (33%), Positives = 127/236 (53%), Gaps = 16/236 (6%)
Frame = -3
Query: 722 ALDDDGNLTD-LGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNEA 546
AL DDG L + +G M+ PL+P +K LI + NC E+L A+LSV F P E
Sbjct: 483 ALADDGKLENPVGYQMSRLPLEPVYSKALILANQFNCLEEMLITVAVLSVESIFYDPREK 542
Query: 545 RKAADEAKMRFAHIDGDHLTLLNVYHAFKQNMED--------------PHWCYDNFINYR 408
R+ A +K FA ++GDHLT L+VY + +E WC +N++N R
Sbjct: 543 REEARTSKNHFASVEGDHLTYLSVYRESDEFLEKRKAAGSGNNIDKIMKKWCKENYVNSR 602
Query: 407 SLKSGDNVRQQLSRIMDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERTGSYLT 228
SLK ++ +Q+ +++ +S D + R+ L FF++ A + G+Y
Sbjct: 603 SLKHARDIYRQIREHVEQIGFNVSSC---GNDM-LAFRRCLAASFFLKAAQRQLDGTYRA 658
Query: 227 VKDNQVVQLHPSTCLDH-KPDWVIYNEFVLTTKNYIRTVTDIKPEWLLKIAPQYYE 63
++ +VV +HP++ L KP+ VI+NE + T+K YI+ +T I WL ++AP +++
Sbjct: 659 LESGEVVHIHPTSVLFRAKPECVIFNELMQTSKKYIKNLTIIDSLWLSELAPHHFQ 714
>At1g27900.1 68414.m03419 RNA helicase, putative similar to SP|Q14562
ATP-dependent helicase DDX8 (RNA helicase HRH1) (DEAH-box
protein 8) {Homo sapiens}; contains Pfam profiles
PF04408: Helicase associated domain (HA2), PF00271:
Helicase conserved C-terminal domain
Length = 700
Score = 118 bits (283), Expect = 5e-27
Identities = 71/231 (30%), Positives = 127/231 (54%), Gaps = 17/231 (7%)
Frame = -3
Query: 722 ALDDDGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFV----RP 555
A+D++G +T +G M++ PL+P L++ LI + C ++ L++ AMLS + +P
Sbjct: 409 AIDENGAITRIGRTMSDLPLEPSLSRTLIEANETGCLSQALTVVAMLSAETTLLPARSKP 468
Query: 554 NEARKAADE-AKMRFAHIDGDHLTLLNVYHAFKQNMEDPHWCYDNFINYRSLKSGDNVRQ 378
+E ++ DE + + GDH+ LL ++ ++ + DP WC +N + R + +VR+
Sbjct: 469 SEKKRKHDEDSNLPNGSGYGDHIQLLQIFESWDRTNYDPVWCKENGMQVRGMVFVKDVRR 528
Query: 377 QLSRIM-----DRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVA-HLERTGSYLTVK-D 219
QL +IM DR + + +S+D Y +RKAL G Q+A + R Y T+
Sbjct: 529 QLCQIMQKISKDRLEVGADGRKSSSRDDYRKLRKALCVGNANQIAERMLRHNGYRTLSFQ 588
Query: 218 NQVVQLHPSTCLD-----HKPDWVIYNEFVLTTKNYIRTVTDIKPEWLLKI 81
+Q+VQ+HPS+ L P++V+Y+E + TT+ ++R V + W+ I
Sbjct: 589 SQLVQVHPSSVLSADNDGMMPNYVVYHELISTTRPFMRNVCAVDMAWVAPI 639
>At1g48650.1 68414.m05445 helicase domain-containing protein contains
similarity to DEIH-box RNA/DNA helicase [Arabidopsis
thaliana] GI:5881579; contains Pfam profiles PF04408:
Helicase associated domain (HA2), PF00271: Helicase
conserved C-terminal domain, PF00035: Double-stranded RNA
binding motif
Length = 1197
Score = 100 bits (239), Expect = 1e-21
Identities = 68/226 (30%), Positives = 123/226 (54%), Gaps = 14/226 (6%)
Frame = -3
Query: 722 ALDDDGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNEAR 543
ALDDD NLT LG ++ P++P+L KMLI NC + ++++ A LSV F+ P + +
Sbjct: 770 ALDDDENLTPLGKNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKK 829
Query: 542 KAADEAKMRFAHID-GDHLTLLNVYHAFKQNMEDPH----WCYDNFINYRSLKSGDNVRQ 378
A+ A+ +F+ D DHLTL+ Y+ +K + E H +C+ NF++ ++LK+ D++R+
Sbjct: 830 DLAETARSKFSGRDYSDHLTLVRAYNGWK-DAERTHSGYDYCWKNFLSSQTLKAMDSMRK 888
Query: 377 QLSRIMDRFNL--KRTSTEFTSKDYYINIRKALVNGFF---MQVAHLERTGSYLTVKDNQ 213
Q ++ +L S D ++ +R + G F V + E++ + T++D Q
Sbjct: 889 QFFNLLKEASLIDNIEGCSKLSHDEHL-VRAIICAGMFPGVCSVVNKEKSITLKTMEDGQ 947
Query: 212 VVQLHPSTCLDHKP----DWVIYNEFVLTTKNYIRTVTDIKPEWLL 87
V+ L+ S+ + P W+++N+ V ++R T + LL
Sbjct: 948 VL-LYSSSVNGNVPMIPFPWLVFNDKVKVNSVFLRDSTAVSDSVLL 992
>At2g01130.1 68415.m00021 helicase domain-containing protein similar
to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
GI:5881579; contains Pfam profiles PF04408: Helicase
associated domain (HA2), PF00271: Helicase conserved
C-terminal domain
Length = 1112
Score = 97.5 bits (232), Expect = 8e-21
Identities = 64/215 (29%), Positives = 117/215 (54%), Gaps = 11/215 (5%)
Frame = -3
Query: 722 ALDDDGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNEAR 543
ALD++ +LT LG +++ P++P+L KMLI C + IL++ A LSV F+ P + +
Sbjct: 689 ALDENEDLTTLGRYLSKLPMEPKLGKMLILGAILGCLDPILTVAAGLSVRDPFLTPQDKK 748
Query: 542 KAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDP---HWCYDNFINYRSLKSGDNVRQQ- 375
A+ AK +F+ DHL L+ Y +K+ E+ +C+ NF++ +SL++ D++R++
Sbjct: 749 DLAEAAKSQFSRDHSDHLALVRAYEGWKKAEEESAVYDYCWKNFLSIQSLRAIDSLRKEF 808
Query: 374 LSRIMDRFNLKRTSTEFTSKDYYINIRKALV-NGFF---MQVAHLERTGSYLTVKDNQVV 207
S + D + + S+ N+ +A++ G + V H ER+ S T++D QV+
Sbjct: 809 FSLLKDTGLIDGNPSICNSEGNDANLTRAVICYGMYPGICSVVHNERSFSLKTMEDGQVL 868
Query: 206 QLHPS-TCLDHK-P-DWVIYNEFVLTTKNYIRTVT 111
S + K P W+++NE + ++R T
Sbjct: 869 LYSNSENARETKIPYPWLVFNEKIKVNSVFLRDST 903
>At5g04895.1 68418.m00514 helicase domain-containing protein similar
to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
GI:5881579;contains Pfam profiles PF04408: Helicase
associated domain (HA2), PF00271: Helicase conserved
C-terminal domain, PF00035: Double-stranded RNA binding
motif
Length = 581
Score = 93.5 bits (222), Expect = 1e-19
Identities = 65/225 (28%), Positives = 113/225 (50%), Gaps = 13/225 (5%)
Frame = -3
Query: 722 ALDDDGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNEAR 543
ALD+ NLTDLG +++ P+DP+L KMLI C + IL+I + LSV F+ P + +
Sbjct: 152 ALDEKENLTDLGKLLSILPVDPKLGKMLIMGAIFRCFDPILTIVSGLSVRDPFLLPQDKK 211
Query: 542 KAADEAKMRFAHID-GDHLTLLNVYHAFKQNMEDP---HWCYDNFINYRSLKSGDNVRQQ 375
A AK+RF+ D DH+ L+ + +K + +C+ NF++ ++L++ ++R+Q
Sbjct: 212 DLALSAKLRFSAKDYSDHMALVRAFEGWKDAEREGSAYEFCWRNFLSAQTLQAIHSLRKQ 271
Query: 374 LSRIMDRFNLKRTSTEFTSKDYYIN--IRKALVNGFF---MQVAHLERTGSYLTVKDNQV 210
+ I+ L +K + +R + +G F V H E + S+ T+ D Q
Sbjct: 272 FNYILKEAGLVHDDLALNNKLSHNQSLVRAVICSGLFPGIASVVHRETSMSFKTMDDGQ- 330
Query: 209 VQLHPSTCLDHKP----DWVIYNEFVLTTKNYIRTVTDIKPEWLL 87
V L+ ++ P W+++ E V IR T + L+
Sbjct: 331 VSLYANSVNSRFPTIPYPWLVFGEKVKVNAVLIRDSTGVPDSSLI 375
>At2g35920.1 68415.m04409 helicase domain-containing protein similar
to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
GI:5881579; contains Pfam profiles PF04408: Helicase
associated domain (HA2), PF00271: Helicase conserved
C-terminal domain
Length = 995
Score = 86.2 bits (204), Expect = 2e-17
Identities = 67/226 (29%), Positives = 104/226 (46%), Gaps = 14/226 (6%)
Frame = -3
Query: 722 ALDDDGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNEAR 543
AL+D LT LG + P+DP + KML+ C N L+I A L+ FV P +
Sbjct: 695 ALNDVEELTPLGRHLCTLPVDPNIGKMLLIGAIFQCVNPALTIAAALAYRSPFVLPLNRK 754
Query: 542 KAADEAKMRFAHID-GDHLTLLNVYHAF---KQNMEDPHWCYDNFINYRSLKSGDNVRQQ 375
+ ADEAK FA DH+ LL Y + K+ + +C+ NF++ +L+ +++R Q
Sbjct: 755 EEADEAKRYFAGDSCSDHIALLKAYEGYRDAKRGGNEKDFCWQNFLSPVTLRMMEDMRNQ 814
Query: 374 LSRIMDRFNL--KRTSTEFTSKDYYIN-IRKALVNGFFMQVAHLERTG--SYLTVKDNQV 210
++ K + Y + I L G + V +R G + K+
Sbjct: 815 FLDLLSDIGFVDKSKPNAYNQYSYDMEMISAVLCAGLYPNVVQCKRRGKRTAFYTKELGK 874
Query: 209 VQLHPSTC-----LDHKPDWVIYNEFVLTTKNYIRTVTDIKPEWLL 87
V +HP + L P +++Y+E V TT YIR T+I LL
Sbjct: 875 VDIHPGSVNARVNLFSLP-YLVYSEKVKTTSVYIRDSTNISDYALL 919
>At4g01020.1 68417.m00137 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1787
Score = 75.4 bits (177), Expect = 4e-14
Identities = 61/226 (26%), Positives = 104/226 (46%), Gaps = 17/226 (7%)
Frame = -3
Query: 701 LTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQ---CFVRPNEARKAAD 531
LT G + + L+P+L K+++ H E + + A+++ C V + + AD
Sbjct: 713 LTQEGHCLVKLGLEPKLGKLILGCFRHRMGKEGIVLAAVMANASSIFCRVGNFDDKMKAD 772
Query: 530 EAKMRFAHIDGDHLTLLNVYHAFKQNMEDPH--WCYDNFINYRSLKSGDNVRQQLSRIMD 357
K++F + +GD TLL+VY + D WC++N +N +S++ ++ ++L ++
Sbjct: 773 RLKVQFCNDNGDLFTLLSVYKEWASLPRDRRNKWCWENSLNAKSMRRCEDTVKELEICIE 832
Query: 356 R-FNLKRTS------TEFTSKDYYIN--IRKALVNGFFMQVAHLERTGSYLTVKDNQVVQ 204
R L S E T D Y+ I +L M + ++ G Y +Q VQ
Sbjct: 833 RELTLVSPSYWVWNPNEGTKHDKYLKMVILASLAENVAMYTGY-DQLG-YEVALTSQQVQ 890
Query: 203 LHPSTCL---DHKPDWVIYNEFVLTTKNYIRTVTDIKPEWLLKIAP 75
LHPS L KP WV++ E + Y+ VT E L + P
Sbjct: 891 LHPSCSLLAFGQKPSWVVFGELLSIVDQYLVCVTAFDFEALYMLDP 936
>At5g10370.1 68418.m01203 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to RNA-dependent ATPase/helicase Cdc28p
[Schizosaccharomyces pombe] GI:1439562; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain, weak hit
to PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1775
Score = 70.1 bits (164), Expect = 1e-12
Identities = 58/226 (25%), Positives = 101/226 (44%), Gaps = 17/226 (7%)
Frame = -3
Query: 701 LTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQ---CFVRPNEARKAAD 531
LT G + + L+P+L K+++ H E + + A+++ C V + + AD
Sbjct: 716 LTQEGHCLVKLGLEPKLGKLILGCFRHRMGKEGIVLAAVMANASSIFCRVGNFDDKMKAD 775
Query: 530 EAKMRFAHIDGDHLTLLNVYHAFKQNMEDPH--WCYDNFINYRSLKSGDNVRQQLSRIMD 357
K++F + +GD TLL+VY + + WC++N +N +S++ ++ ++L ++
Sbjct: 776 RLKVQFCNQNGDLFTLLSVYKEWASLPRERRNKWCWENSLNAKSMRRCEDTVKELEICIE 835
Query: 356 R-FNLKRTS------TEFTSKDYYIN--IRKALVNGFFMQVAHLERTGSYLTVKDNQVVQ 204
R L S E T D ++ I +L M + + Y Q VQ
Sbjct: 836 RELTLVSPSYWVWNPNEGTKHDKHLKMVILASLAENVAMYTGYNQL--GYEVALTGQQVQ 893
Query: 203 LHPSTCL---DHKPDWVIYNEFVLTTKNYIRTVTDIKPEWLLKIAP 75
LHPS L KP WV++ E + Y+ VT E L + P
Sbjct: 894 LHPSCSLLAFGQKPSWVVFGELLSIVDQYLVCVTACDFEALYMLDP 939
>At1g33390.1 68414.m04133 helicase domain-containing protein similar
to kurz protein [Drosophila melanogaster] GI:5869803;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1237
Score = 55.6 bits (128), Expect = 3e-08
Identities = 64/277 (23%), Positives = 121/277 (43%), Gaps = 62/277 (22%)
Frame = -3
Query: 722 ALDDDGNLTDLGAVMAEFPLDPQLAKMLIA-------SCNHNCSNEIL----SITAMLSV 576
ALD +G LT LG M+ +P+ P+ ++ML+ + N++ +N IL + A LS+
Sbjct: 806 ALDSNGGLTPLGKAMSHYPMSPRHSRMLLTVIQMLKETRNYSRANLILGYAVAAVAALSL 865
Query: 575 PQCFV------RPNEARKAADEAKM------------------RFAHIDGDHLTLLNVYH 468
P + + NE++ A K RF++ D LT+ H
Sbjct: 866 PNPLIMEFEGEKKNESKDADKTVKQEDKQRKKDRKEKIKAARDRFSNPSSDALTVAYALH 925
Query: 467 AFKQNMEDPHWCYDNFINYRSLKSGDNVRQQLSRIM----------DRFNLKRTSTEFTS 318
+F+ + +C N ++ +++ ++ QL R++ D F+ + +
Sbjct: 926 SFEVSENGMGFCEANGLHLKTMDEMSKLKDQLLRLVFNCCKPSETEDSFSWTHGTIQDVE 985
Query: 317 KDYYIN----------------IRKALVNGFFMQVAHLERTGSYLTVKDNQVVQLHP-ST 189
K + I + +A+ G+ +VA R Y + V LH S+
Sbjct: 986 KSWRITTSTSSKTPLLQNEEELLGEAICAGWADRVARKTRATEYQACAVQEPVFLHRWSS 1045
Query: 188 CLDHKPDWVIYNEFVLTTKNYIRTVTDIKPEWLLKIA 78
++ P+ ++Y+E +LT + Y+ T ++PEWL+K A
Sbjct: 1046 LINSAPELLVYSELLLTNRPYMHGATRVRPEWLVKHA 1082
>At2g30800.1 68415.m03755 DEIH-box RNA/DNA helicase, putative similar
to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
GI:5881579; contains Pfam profiles PF04408: Helicase
associated domain (HA2), PF00271: Helicase conserved
C-terminal domain
Length = 1299
Score = 50.0 bits (114), Expect = 2e-06
Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 11/168 (6%)
Frame = -3
Query: 722 ALDDDGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNE-- 549
AL LT+LG P+ P ++KML + NC + L++ + F P
Sbjct: 744 ALTPQEELTELGEKFGHLPVHPLISKMLFFAVLVNCLDPALTLACAADYKEPFTMPMSPV 803
Query: 548 ARKAADEAKMRFAHI---DGDHLTLLNVYHAFKQNME---DPHWCYDNFINYRSLKSGDN 387
R+ A AK+ A + D DHL ++ + +K +C F++ ++K D
Sbjct: 804 ERQKAAAAKLELASLCGGDSDHLAVVAAFECWKNAKGRGLSAEFCSQYFVSPSAMKMLDQ 863
Query: 386 VRQQLSRIMDRFNL---KRTSTEFTSKDYYINIRKALVNGFFMQVAHL 252
+R QL + R + +S S+D I +R L G + V L
Sbjct: 864 MRSQLESELKRHGIIPNDISSCSQNSRDPGI-LRAVLAVGLYPMVGRL 910
>At1g58060.1 68414.m06580 helicase domain-containing protein contains
similarity to SP|P24785 Dosage compensation regulator
(Male-less protein) (No action potential protein)
{Drosophila melanogaster}; contains Pfam profiles
PF04408: Helicase associated domain (HA2), PF00271:
Helicase conserved C-terminal domain
Length = 1459
Score = 48.4 bits (110), Expect = 5e-06
Identities = 27/82 (32%), Positives = 42/82 (51%)
Frame = -3
Query: 722 ALDDDGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNEAR 543
A++ D LT LG +A+ P+D + KML+ C + ILSI A LS F+ P + +
Sbjct: 1108 AVEGDEELTPLGHHLAKLPVDVLIGKMLLYGGIFGCLSPILSIAAFLSYKSPFIYPKDEK 1167
Query: 542 KAADEAKMRFAHIDGDHLTLLN 477
+ D K+ +G + LN
Sbjct: 1168 QNVDRVKLALLSDNGVSSSDLN 1189
>At1g06670.1 68414.m00707 DEIH-box RNA/DNA helicase identical to
DEIH-box RNA/DNA helicase GB:BAA84364 GI:5881579
[Arabidopsis thaliana]
Length = 1576
Score = 44.0 bits (99), Expect = 1e-04
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Frame = -3
Query: 722 ALDDDGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNEA- 546
AL + LT+LG + P+ P+++KM+ + NC + L + F P
Sbjct: 768 ALTPEEELTELGQKFGQLPVHPRISKMIYFAILVNCLDPALILACAADEKDPFTMPLSPG 827
Query: 545 -RKAADEAKMRFAHIDGDHLTLLNVYHAF------KQNMEDPHWCYDNFINYRSLKSGDN 387
RK A AK A + GDH L AF K + + +C FI+ +K D+
Sbjct: 828 DRKKAAAAKHELASLYGDHSDHLATVAAFQCWKNAKASGQAKEFCSKYFISQVVMKRLDD 887
Query: 386 VRQQLSRIMDRFNLKRTST 330
+ ++L ++R + +S+
Sbjct: 888 LCRKLQGELNRHGVIPSSS 906
>At1g58050.1 68414.m06579 helicase domain-containing protein contains
similarity to SP|P24785 Dosage compensation regulator
(Male-less protein) (No action potential protein)
{Drosophila melanogaster}; contains Pfam profiles
PF04408: Helicase associated domain (HA2), PF00271:
Helicase conserved C-terminal domain
Length = 1417
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/48 (43%), Positives = 28/48 (58%)
Frame = -3
Query: 722 ALDDDGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLS 579
AL+ D LT LG +A+ P+D + KML+ C + ILSI A LS
Sbjct: 1075 ALEGDEELTPLGHHLAKLPVDLLIGKMLLYGGIFGCLSPILSIAAFLS 1122
>At2g31770.1 68415.m03879 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam domain,
PF01485: IBR domain
Length = 543
Score = 31.5 bits (68), Expect = 0.58
Identities = 22/71 (30%), Positives = 33/71 (46%)
Frame = -3
Query: 461 KQNMEDPHWCYDNFINYRSLKSGDNVRQQLSRIMDRFNLKRTSTEFTSKDYYINIRKALV 282
+ +E H C +N + +KS D S + F +K T +K Y+ N+ KAL
Sbjct: 437 ESGLERLHHCAENELKQFFIKSEDP-----SDTFNAFRMKLTGLTTVTKTYFENLVKALE 491
Query: 281 NGFFMQVAHLE 249
NG + V H E
Sbjct: 492 NG-LVDVTHNE 501
>At2g31760.1 68415.m03878 zinc finger protein-related contains low
similarity to zinc finger proteins and Pfam PF01485: IBR
domain
Length = 514
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/74 (28%), Positives = 32/74 (43%)
Frame = -3
Query: 452 MEDPHWCYDNFINYRSLKSGDNVRQQLSRIMDRFNLKRTSTEFTSKDYYINIRKALVNGF 273
+E H C +N + +KS D S + F +K T +K Y+ N+ KAL NG
Sbjct: 430 LERLHHCAENELKQFFIKSEDP-----SDTFNAFRMKLTGLTKVTKTYFDNLVKALENGL 484
Query: 272 FMQVAHLERTGSYL 231
E + +L
Sbjct: 485 ADVTKSSEESADFL 498
>At3g61530.2 68416.m06892 ketopantoate hydroxymethyltransferase
family protein similar to SP|Q9Y7B6
3-methyl-2-oxobutanoate hydroxymethyltransferase (EC
2.1.2.11) (Ketopantoate hydroxymethyltransferase)
{Emericella nidulans}; contains Pfam profile PF02548:
Ketopantoate hydroxymethyltransferase
Length = 354
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = -3
Query: 653 LAKMLIASCNHNCSNEILSITAMLSVPQCFV----RPNEARKAADEAKMRFAHIDGDHLT 486
+A L+ SC S I ++ M +VP+ V +P + + ++R H G+ +T
Sbjct: 1 MAASLVRSCCSRASRAITTVRFMSNVPEDTVYGGPKPQNSNQRVTLTQLRQKHRKGEPIT 60
Query: 485 LLNVY 471
++ Y
Sbjct: 61 MVTAY 65
>At3g61530.1 68416.m06891 ketopantoate hydroxymethyltransferase
family protein similar to SP|Q9Y7B6
3-methyl-2-oxobutanoate hydroxymethyltransferase (EC
2.1.2.11) (Ketopantoate hydroxymethyltransferase)
{Emericella nidulans}; contains Pfam profile PF02548:
Ketopantoate hydroxymethyltransferase
Length = 354
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = -3
Query: 653 LAKMLIASCNHNCSNEILSITAMLSVPQCFV----RPNEARKAADEAKMRFAHIDGDHLT 486
+A L+ SC S I ++ M +VP+ V +P + + ++R H G+ +T
Sbjct: 1 MAASLVRSCCSRASRAITTVRFMSNVPEDTVYGGPKPQNSNQRVTLTQLRQKHRKGEPIT 60
Query: 485 LLNVY 471
++ Y
Sbjct: 61 MVTAY 65
>At1g17550.1 68414.m02161 protein phosphatase 2C-related /
PP2C-related similar to protein phosphatase 2C
GI:3242077 from (Arabidopsis thaliana)
Length = 511
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = -3
Query: 713 DDGNLTDLGAVMAEFPLDP-QLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNEAR 543
D+G + ++ E ++ A++LIAS NH+ + E+ + ++ +P+ PN AR
Sbjct: 120 DNGRVLATAIILNETTIEQVPTAEVLIASLNHDVNMEVATSEVVIRLPE--ENPNVAR 175
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,905,463
Number of Sequences: 28952
Number of extensions: 336539
Number of successful extensions: 951
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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