BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10c13f (649 letters) Database: tribolium 336 sequences; 122,585 total letters Searching.......................................................done Score E Sequences producing significant alignments: (bits) Value AF442747-1|AAL40947.1| 669|Tribolium castaneum ABC transmembran... 24 1.2 AF422804-1|AAL56571.1| 669|Tribolium castaneum ABC transmembran... 23 1.6 AY800247-1|AAV66724.1| 790|Tribolium castaneum pangolin protein. 22 3.8 AY800246-1|AAV66723.1| 682|Tribolium castaneum pangolin protein. 22 3.8 AJ415419-1|CAC94468.1| 441|Tribolium castaneum transcription fa... 22 3.8 X91618-1|CAA62821.1| 524|Tribolium castaneum hunchback protein. 22 5.0 EU019713-1|ABU25225.1| 528|Tribolium castaneum chitin deacetyla... 21 6.6 EU019712-1|ABU25224.1| 535|Tribolium castaneum chitin deacetyla... 21 6.6 >AF442747-1|AAL40947.1| 669|Tribolium castaneum ABC transmembrane transporter protein. Length = 669 Score = 23.8 bits (49), Expect = 1.2 Identities = 29/129 (22%), Positives = 55/129 (42%), Gaps = 5/129 (3%) Frame = +1 Query: 175 GITGEPSEXXXXXXXXXXXXXPGLNKYTGLPHSQRYHELLRKRLGLPVWE---YKNDFMR 345 G T P+ +N + + S+ L KR PV + KN F Sbjct: 41 GTTSHPTSKLVPPDERITYSWTEINAFANVSPSKTKFFNLIKRKDSPVQKKHILKNVF-G 99 Query: 346 LLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGVACTQPRRVAAMSVAQRVA- 522 + + + ++G +G+GKTT + ++ F S L G+ C V++ ++A + A Sbjct: 100 VAYPGELLAILGSSGAGKTTLLN--TLTFHTSSNL-TVSGLRCVNGIPVSSKTLASQSAY 156 Query: 523 -EEMDVALG 546 ++ D+ +G Sbjct: 157 VQQDDLFIG 165 >AF422804-1|AAL56571.1| 669|Tribolium castaneum ABC transmembrane transporter white protein. Length = 669 Score = 23.4 bits (48), Expect = 1.6 Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 2/64 (3%) Frame = +1 Query: 361 QCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGVACTQPRRVAAMSVAQRVA--EEMD 534 + + ++G +G+GKTT + ++ F S L G+ C V++ ++A + A ++ D Sbjct: 105 ELLAILGSSGAGKTTLLN--TLTFHTSSNL-TVSGLRCVNGIPVSSKTLASQSAYVQQDD 161 Query: 535 VALG 546 + +G Sbjct: 162 LFIG 165 >AY800247-1|AAV66724.1| 790|Tribolium castaneum pangolin protein. Length = 790 Score = 22.2 bits (45), Expect = 3.8 Identities = 8/17 (47%), Positives = 14/17 (82%) Frame = +2 Query: 548 RKLVTAFVLKTVQGHKH 598 RKL++A+ + TV GH++ Sbjct: 380 RKLLSAWYMNTVLGHQN 396 >AY800246-1|AAV66723.1| 682|Tribolium castaneum pangolin protein. Length = 682 Score = 22.2 bits (45), Expect = 3.8 Identities = 8/17 (47%), Positives = 14/17 (82%) Frame = +2 Query: 548 RKLVTAFVLKTVQGHKH 598 RKL++A+ + TV GH++ Sbjct: 272 RKLLSAWYMNTVLGHQN 288 >AJ415419-1|CAC94468.1| 441|Tribolium castaneum transcription factor protein. Length = 441 Score = 22.2 bits (45), Expect = 3.8 Identities = 10/22 (45%), Positives = 12/22 (54%) Frame = -1 Query: 214 SCW*LLLKVHR*FQISQQPQPS 149 +CW L +QIS QP PS Sbjct: 322 NCWSLTSSPPPPYQISAQPTPS 343 >X91618-1|CAA62821.1| 524|Tribolium castaneum hunchback protein. Length = 524 Score = 21.8 bits (44), Expect = 5.0 Identities = 8/22 (36%), Positives = 14/22 (63%) Frame = +1 Query: 238 PGLNKYTGLPHSQRYHELLRKR 303 PG + G P++Q +L+R+R Sbjct: 366 PGYPFFGGFPNAQLLQQLIRER 387 >EU019713-1|ABU25225.1| 528|Tribolium castaneum chitin deacetylase 2B protein. Length = 528 Score = 21.4 bits (43), Expect = 6.6 Identities = 8/13 (61%), Positives = 9/13 (69%) Frame = +2 Query: 479 NQDEWLLCLLLRG 517 N+ WL CLLL G Sbjct: 3 NKTYWLCCLLLLG 15 >EU019712-1|ABU25224.1| 535|Tribolium castaneum chitin deacetylase 2A protein. Length = 535 Score = 21.4 bits (43), Expect = 6.6 Identities = 8/13 (61%), Positives = 9/13 (69%) Frame = +2 Query: 479 NQDEWLLCLLLRG 517 N+ WL CLLL G Sbjct: 3 NKTYWLCCLLLLG 15 Database: tribolium Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 122,585 Number of sequences in database: 336 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 149,476 Number of Sequences: 336 Number of extensions: 3141 Number of successful extensions: 9 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 9 length of database: 122,585 effective HSP length: 55 effective length of database: 104,105 effective search space used: 16656800 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -