Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10c13f
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 168 5e-43
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 142 5e-35
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 128 9e-31
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 126 4e-30
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 118 1e-27
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 108 6e-25
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 102 5e-23
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 95 6e-21
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 75 7e-15
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 30 0.33
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 29 0.76
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 27 1.8
SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb... 26 4.1
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 26 5.4
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 25 7.1
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 25 7.1
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 25 9.4
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 25 9.4
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 168 bits (409), Expect = 5e-43
Identities = 83/134 (61%), Positives = 105/134 (78%)
Frame = +1
Query: 247 NKYTGLPHSQRYHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSV 426
N + P SQ Y ++L R LPV++ + +F+++ + +Q IV VGETGSGKTTQIPQ+ V
Sbjct: 54 NFFNDKPFSQNYFKILETRRELPVYQQREEFLKIYHENQIIVFVGETGSGKTTQIPQF-V 112
Query: 427 EFAAVSGLGKAKGVACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLK 606
+ + L + +ACTQPRRVAAMSVA+RVA+EMDV LG+EVGY+IRFEDCSGP TLLK
Sbjct: 113 LYDELPHLTNTQ-IACTQPRRVAAMSVAKRVADEMDVDLGEEVGYNIRFEDCSGPNTLLK 171
Query: 607 YMTDGMLLREAMSD 648
YMTDGMLLREAM+D
Sbjct: 172 YMTDGMLLREAMTD 185
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 142 bits (343), Expect = 5e-35
Identities = 67/116 (57%), Positives = 90/116 (77%)
Frame = +1
Query: 301 RLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGVACTQ 480
R LPV++YK+D ++ +N +Q +++V ETGSGKTTQ+PQ+ E G K + CTQ
Sbjct: 415 RKSLPVYQYKDDLLKAINEYQVLLIVAETGSGKTTQLPQFLHEAGYTKG---NKKICCTQ 471
Query: 481 PRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAMSD 648
PRRVAAMSVA RVA+EMDV LGQEVGYSIRFE+ + +T++KY+TDGMLLRE +++
Sbjct: 472 PRRVAAMSVAARVAKEMDVRLGQEVGYSIRFENATSEKTVIKYLTDGMLLREFLTE 527
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 128 bits (308), Expect = 9e-31
Identities = 64/117 (54%), Positives = 85/117 (72%)
Frame = +1
Query: 298 KRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGVACT 477
+R GLPV++ + F+ ++ +Q +VL+GETGSGKTTQI Q+ E S +K + CT
Sbjct: 506 QREGLPVFKLRKQFLEAVSKNQILVLLGETGSGKTTQITQYLAEEGYTSD---SKMIGCT 562
Query: 478 QPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAMSD 648
QPRRVAAMSVA+RVAEE+ +G+EVGY+IRFED + T +KYMTDGML RE + D
Sbjct: 563 QPRRVAAMSVAKRVAEEVGCRVGEEVGYTIRFEDKTSRMTQIKYMTDGMLQRECLVD 619
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 126 bits (303), Expect = 4e-30
Identities = 65/131 (49%), Positives = 89/131 (67%)
Frame = +1
Query: 250 KYTGLPHSQRYHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVE 429
K T ++ Y E +R LP + + + ++ +Q +++VGETGSGKTTQ+ Q+ E
Sbjct: 475 KDTEFARTKSYRE---QREFLPAFAVREQLLSVIRDNQVLIVVGETGSGKTTQLAQFLYE 531
Query: 430 FAAVSGLGKAKGVACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKY 609
G + + CTQPRRVAAMSVA+RV+EEM V LG VGYSIRFED +GP T++KY
Sbjct: 532 ----DGYHRNGMIGCTQPRRVAAMSVAKRVSEEMGVRLGSTVGYSIRFEDVTGPDTVIKY 587
Query: 610 MTDGMLLREAM 642
MTDG+LLRE++
Sbjct: 588 MTDGVLLRESL 598
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 118 bits (283), Expect = 1e-27
Identities = 59/121 (48%), Positives = 85/121 (70%)
Frame = +1
Query: 286 ELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKG 465
++L +R LP+WE + + + ++ IV+VGETGSGK+TQIPQ+ E +
Sbjct: 88 DILEQRKNLPIWEAHDTLCQQIQDNRVIVVVGETGSGKSTQIPQFLNECP----YAQEGC 143
Query: 466 VACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAMS 645
VA TQPRRVAA+++A+RVA E LG++VGYSIRF+D + +T +KY+TDGMLLRE ++
Sbjct: 144 VAITQPRRVAAVNLAKRVAAEQGCRLGEQVGYSIRFDDTTSKKTRIKYLTDGMLLRELIN 203
Query: 646 D 648
D
Sbjct: 204 D 204
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 108 bits (260), Expect = 6e-25
Identities = 54/129 (41%), Positives = 80/129 (62%)
Frame = +1
Query: 247 NKYTGLPHSQRYHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSV 426
N ++ S Y +R+R LP WE + M + Q +V+ GETGSGK+TQ+ Q+ +
Sbjct: 556 NNWSERVKSPSYQLKVREREKLPAWESRRKIMDAIQHSQVVVISGETGSGKSTQVVQFIL 615
Query: 427 EFAAVSGLGKAKGVACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLK 606
+ SG + V CTQPRR++A+S+A+RVA E D +G+EVGYS+ E +TLL+
Sbjct: 616 DHYLSSGEKDLQTVVCTQPRRISAISLAERVAFERDTTVGKEVGYSVHGEKSISKETLLE 675
Query: 607 YMTDGMLLR 633
+ T G+LLR
Sbjct: 676 FCTTGLLLR 684
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 102 bits (244), Expect = 5e-23
Identities = 53/122 (43%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
Frame = +1
Query: 286 ELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKG 465
E+ RL LP+ + M + + +++ G TGSGKTTQ+PQ+ E S + G
Sbjct: 390 EIQESRLALPIVAEEQRIMEQIFANDVVIICGATGSGKTTQLPQFLFEAGFSSPESENPG 449
Query: 466 -VACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAM 642
+A TQPRRVAA+S+A+RV+EE+ +V Y IRF+ P T +K+MTDG+LLRE
Sbjct: 450 MIAITQPRRVAAVSIAKRVSEEL-TGFSSKVSYQIRFDSTINPDTAIKFMTDGILLRELS 508
Query: 643 SD 648
SD
Sbjct: 509 SD 510
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 95.5 bits (227), Expect = 6e-21
Identities = 50/119 (42%), Positives = 75/119 (63%)
Frame = +1
Query: 292 LRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGVA 471
++K+L LP+ +Y+N + + +Q +++G TG GKTTQIPQ+ E S G +
Sbjct: 20 IQKKL-LPITKYRNQLLYAVEQNQITIVLGHTGCGKTTQIPQFLYEAGWASQNGI---IG 75
Query: 472 CTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAMSD 648
CTQPRR+ A SV++RV+ E++ G GYSI+F+ +T +KYMTDG+LL E D
Sbjct: 76 CTQPRRLVAKSVSERVSLELNSPPGSLCGYSIQFDHNVSEKTKIKYMTDGILLNEIFFD 134
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 75.4 bits (177), Expect = 7e-15
Identities = 47/135 (34%), Positives = 75/135 (55%), Gaps = 5/135 (3%)
Frame = +1
Query: 244 LNKYTGLPHSQRYHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWS 423
LNK+ S+ + R LP ++ + +N Q +++ G+TG GK+TQIP +
Sbjct: 609 LNKWRQQLESESAEKFKVFRNQLPATMFRETIIDAVNNSQLLIISGDTGCGKSTQIPAFL 668
Query: 424 VEFAAVSGLGKAKGVACTQPRRVAAMSVAQRVAEEM----DVALGQE-VGYSIRFEDCSG 588
+E + + GKA + T+PRR++A+S+A RV++E+ A E VGYS+R +
Sbjct: 669 LENSTKN--GKAVKIYVTEPRRISAISLANRVSQELGGNPPSARSHELVGYSVRLDSKCT 726
Query: 589 PQTLLKYMTDGMLLR 633
P T L Y+T G LR
Sbjct: 727 PLTPLTYVTTGTFLR 741
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 29.9 bits (64), Expect = 0.33
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = +1
Query: 349 LNTHQCIVLVGETGSGKTTQI 411
+ T++ ++LVGETG+GKTT I
Sbjct: 464 VQTNEPLLLVGETGTGKTTTI 484
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 343 RLLNTHQCIVLVGETGSGKTT 405
R L + ++LVG+TG GKTT
Sbjct: 1181 RCLLAKEPVLLVGDTGCGKTT 1201
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 28.7 bits (61), Expect = 0.76
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +1
Query: 340 MRLLNTHQCIVLVGETGSGKT 402
M+ + +QCI++ GE+G+GKT
Sbjct: 120 MKSYHENQCIIISGESGAGKT 140
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +1
Query: 280 YHELLRKRLGLPVWEYKNDFMRLLNT---HQCIVLVGETGSGKTTQIPQWSVEFAAVSGL 450
Y E R L ++ D + +N +Q I++ GE+G+GKT FA+V L
Sbjct: 131 YSEKSRDELDPHLYAIAEDSYKCMNQEHKNQTIIISGESGAGKTVSARYIMRYFASVQAL 190
>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 220
Score = 26.2 bits (55), Expect = 4.1
Identities = 18/85 (21%), Positives = 38/85 (44%)
Frame = +1
Query: 367 IVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGVACTQPRRVAAMSVAQRVAEEMDVALG 546
++LVG G+GK TQ P ++ ++ L + R+ A+++ ++ +
Sbjct: 6 LILVGPPGAGKGTQAPNIQKKY-GIAHLATGDMLRSQVARQTELGKEAKKIMDQGGLVSD 64
Query: 547 QEVGYSIRFEDCSGPQTLLKYMTDG 621
V I+ E + P+ ++ DG
Sbjct: 65 DIVTGMIKDEILNNPECKNGFILDG 89
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +1
Query: 265 PHSQRYHELLRKRLGLPVWEYKNDF 339
PHS RYH L LG +NDF
Sbjct: 36 PHSSRYHWQLHSNLGESAVFDENDF 60
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 25.4 bits (53), Expect = 7.1
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 283 HELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTT 405
H +R R LP+ ND + + I +VG TG+GK+T
Sbjct: 1228 HYSVRYRENLPL--VLNDISVNIKPQEKIGIVGRTGAGKST 1266
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +1
Query: 361 QCIVLVGETGSGKTT 405
+ IVL+GE G+GKTT
Sbjct: 376 EIIVLLGENGTGKTT 390
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 25.0 bits (52), Expect = 9.4
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = +1
Query: 262 LPHSQRYHELLRKRLGLPVWEYKNDFMRLLNTHQCI--VLVGETGSGKTTQI 411
LPH L G + EY N F+R L QC +L G+ G T +
Sbjct: 940 LPHHIFLSSALNVTGGATLHEYGNTFIRQLEYSQCTFKLLDGDKEVGSKTML 991
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1530
Score = 25.0 bits (52), Expect = 9.4
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 12/96 (12%)
Frame = +1
Query: 322 EYKNDFMRLLNTHQCIV-------LVGETGSGKTT--QIPQWSVEFAAVSG--LGKAKGV 468
+ K + RLLN Q V L+GE+G+GKTT + V+ V+G L +G+
Sbjct: 892 QIKGEHRRLLNGVQGFVVPGKLTALMGESGAGKTTLLNVLAQRVDTGVVTGDMLVNGRGL 951
Query: 469 ACTQPRRVAAMSVAQRVAEEMDVALGQE-VGYSIRF 573
T RR ++ DV +G+ V ++RF
Sbjct: 952 DSTFQRRTG-------YVQQQDVHIGESTVREALRF 980
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,598,019
Number of Sequences: 5004
Number of extensions: 50919
Number of successful extensions: 174
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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