Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10c13f
(649 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.) 136 1e-32
SB_49454| Best HMM Match : No HMM Matches (HMM E-Value=.) 132 2e-31
SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14) 102 2e-22
SB_40812| Best HMM Match : No HMM Matches (HMM E-Value=.) 98 6e-21
SB_4771| Best HMM Match : DEAD (HMM E-Value=0.015) 93 2e-19
SB_27922| Best HMM Match : No HMM Matches (HMM E-Value=.) 89 2e-18
SB_36410| Best HMM Match : No HMM Matches (HMM E-Value=.) 82 3e-16
SB_50927| Best HMM Match : DEAD (HMM E-Value=3.2e-06) 77 1e-14
SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16) 76 2e-14
SB_36064| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 7e-11
SB_31654| Best HMM Match : Pox_F16 (HMM E-Value=5) 58 8e-09
SB_54154| Best HMM Match : HA2 (HMM E-Value=3.5e-22) 53 2e-07
SB_44906| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_12766| Best HMM Match : Helicase_C (HMM E-Value=5.8e-09) 43 2e-04
SB_52252| Best HMM Match : DEAD (HMM E-Value=0.96) 32 0.016
SB_4921| Best HMM Match : Myosin_head (HMM E-Value=7.39998e-41) 31 0.61
SB_29364| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_52863| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_34413| Best HMM Match : Myosin_head (HMM E-Value=0) 29 3.3
SB_29759| Best HMM Match : ABC_tran (HMM E-Value=0) 29 4.3
SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0) 29 4.3
SB_5844| Best HMM Match : RA (HMM E-Value=2.1e-10) 29 4.3
SB_4502| Best HMM Match : SpoIIIAC (HMM E-Value=2.8) 29 4.3
SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17) 28 5.7
SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0) 28 7.5
SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_54473| Best HMM Match : DLIC (HMM E-Value=0) 27 9.9
SB_14248| Best HMM Match : AAA_5 (HMM E-Value=7.7e-14) 27 9.9
SB_32548| Best HMM Match : Myosin_head (HMM E-Value=2.9e-17) 27 9.9
>SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1303
Score = 136 bits (330), Expect = 1e-32
Identities = 64/120 (53%), Positives = 94/120 (78%)
Frame = +1
Query: 289 LLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGV 468
++++R GLP+++ +++ ++ ++ +Q ++++GETGSGKTTQI Q+ E ++ GK +
Sbjct: 271 IIQQREGLPIFKLRDELVKAVHQNQVLIVIGETGSGKTTQITQYLAEQGFLTQ-GK---L 326
Query: 469 ACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAMSD 648
ACTQPRRVAAMSVA+RV+EE LGQEVGY+IRFEDC+ P+T +KYMTDG LLRE + D
Sbjct: 327 ACTQPRRVAAMSVAKRVSEEFGCRLGQEVGYTIRFEDCTSPETKIKYMTDGFLLRECLID 386
>SB_49454| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 696
Score = 132 bits (320), Expect = 2e-31
Identities = 62/127 (48%), Positives = 90/127 (70%)
Frame = +1
Query: 268 HSQRYHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSG 447
H+ + R++L LP++ + + + Q +++VGETGSGKTTQIPQ+ E +
Sbjct: 44 HTHASSPIQRQKLSLPIFSARKSLITEIRNRQNVIIVGETGSGKTTQIPQYLYE----AK 99
Query: 448 LGKAKGVACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKYMTDGML 627
+ + +ACTQPRRVAA+S+AQRV+ EM V LG+EVGY++RFED + +T +KYMTDGML
Sbjct: 100 VARNSVIACTQPRRVAAISIAQRVSREMGVQLGEEVGYTVRFEDVTSTKTRIKYMTDGML 159
Query: 628 LREAMSD 648
LRE++ D
Sbjct: 160 LRESIGD 166
>SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)
Length = 1197
Score = 102 bits (245), Expect = 2e-22
Identities = 49/97 (50%), Positives = 71/97 (73%)
Frame = +1
Query: 289 LLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGV 468
L+++R LP++ + + + ++ +Q +++VGETGSGKTTQ+ Q+ E G +
Sbjct: 602 LVQQRQYLPIFAVRQELLSIVRDNQVVIIVGETGSGKTTQLTQYMHE----DGYTNYGMI 657
Query: 469 ACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFED 579
CTQPRRVAAMSVA+RV+EEMD +LG+EVGY+IRFED
Sbjct: 658 GCTQPRRVAAMSVAKRVSEEMDCSLGEEVGYAIRFED 694
>SB_40812| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1168
Score = 97.9 bits (233), Expect = 6e-21
Identities = 50/125 (40%), Positives = 80/125 (64%)
Frame = +1
Query: 274 QRYHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLG 453
+R E+ RL LP+ + M ++ + ++L GETGSGKTTQ+PQ+ E +G
Sbjct: 282 EREPEIQAARLQLPILAEEQAIMEAISENNVVILCGETGSGKTTQVPQFLYE----AGYT 337
Query: 454 KAKGVACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLR 633
K + T+PRRVAA+S++QRVA+EM + +V Y IR++ + +T++K+MTDG++L+
Sbjct: 338 KRGLIGITEPRRVAAVSMSQRVAKEMSMPT-SKVSYQIRYQGNTSDETVIKFMTDGVMLK 396
Query: 634 EAMSD 648
E D
Sbjct: 397 EVEKD 401
>SB_4771| Best HMM Match : DEAD (HMM E-Value=0.015)
Length = 592
Score = 93.1 bits (221), Expect = 2e-19
Identities = 42/99 (42%), Positives = 67/99 (67%)
Frame = +1
Query: 280 YHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKA 459
+ +L +R LPV+ YK+ ++ ++ ++ I++ G TG GKTTQ+PQ+ ++ +G G
Sbjct: 297 FKAMLEQRSQLPVFNYKHAILQAVHENRVIIIKGATGCGKTTQVPQFVLDAFLENGQGAE 356
Query: 460 KGVACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFE 576
+ TQPRR++A+SVA+RVA E ALG VGYS+RF+
Sbjct: 357 CNIVVTQPRRISAVSVAERVAAERSEALGNSVGYSVRFD 395
>SB_27922| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1704
Score = 89.4 bits (212), Expect = 2e-18
Identities = 43/112 (38%), Positives = 68/112 (60%)
Frame = +1
Query: 310 LPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGVACTQPRR 489
LP+ Y ++ + + + V+ G TGSGKTTQ+PQ+ ++ A + + TQPRR
Sbjct: 74 LPITSYHHEIVNTIENNSACVIFGPTGSGKTTQVPQYILDHYAKQR--RYCNILVTQPRR 131
Query: 490 VAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAMS 645
+AA+S+A+RV +E D LG +GY I + C T L Y+T G+LL++ +S
Sbjct: 132 IAAVSIAKRVCQERDCPLGSLIGYQIGRDKCVSEDTRLAYVTTGVLLQKLIS 183
>SB_36410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 311
Score = 82.2 bits (194), Expect = 3e-16
Identities = 41/115 (35%), Positives = 68/115 (59%)
Frame = +1
Query: 286 ELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKG 465
+L R + LP+ +++ + + HQ +++ G+TG GK+TQ+PQ+ + +G +
Sbjct: 162 KLKRDQTNLPISQFRQQIVDAVKNHQVVIIAGDTGCGKSTQVPQYLLH----AGFTE--- 214
Query: 466 VACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKYMTDGMLL 630
+ACTQPRR+A +S+A+RV E G EV Y IRFE T + ++T+ LL
Sbjct: 215 IACTQPRRIACISLAKRVGFETLNEYGSEVAYQIRFEGSKTSATRILFLTEACLL 269
>SB_50927| Best HMM Match : DEAD (HMM E-Value=3.2e-06)
Length = 368
Score = 77.0 bits (181), Expect = 1e-14
Identities = 40/85 (47%), Positives = 50/85 (58%)
Frame = +1
Query: 394 GKTTQIPQWSVEFAAVSGLGKAKGVACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRF 573
GKTTQIPQ+ ++ G + CTQPRR++AMSVA+RVA E LG VG+ +R
Sbjct: 3 GKTTQIPQFILDSYLEREKGAGCNIICTQPRRISAMSVAERVAAERAEKLGDSVGFKVRL 62
Query: 574 EDCSGPQTLLKYMTDGMLLREAMSD 648
E T L Y T G+LLR SD
Sbjct: 63 ESKQSSSTRLLYCTTGILLRYFESD 87
>SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)
Length = 2352
Score = 76.2 bits (179), Expect = 2e-14
Identities = 41/98 (41%), Positives = 62/98 (63%), Gaps = 1/98 (1%)
Frame = +1
Query: 271 SQRYH-ELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSG 447
S R++ E R LP++ K+ ++ + +Q VL+GETGSGK+TQI Q+ + +G
Sbjct: 709 SNRFNREKRRLESALPIYARKSQIIQTIKDNQVTVLIGETGSGKSTQIGQYLYD----AG 764
Query: 448 LGKAKGVACTQPRRVAAMSVAQRVAEEMDVALGQEVGY 561
L + CTQPR+VAA S+AQ+V+ EM +G+ VGY
Sbjct: 765 LADKGQIVCTQPRKVAATSLAQQVSREMGQKVGKLVGY 802
>SB_36064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 36
Score = 64.5 bits (150), Expect = 7e-11
Identities = 28/35 (80%), Positives = 33/35 (94%)
Frame = +1
Query: 499 MSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLL 603
MSVAQRVA+E+DV LGQEVGY+IRFEDC+GP+T L
Sbjct: 1 MSVAQRVADELDVTLGQEVGYTIRFEDCTGPRTAL 35
>SB_31654| Best HMM Match : Pox_F16 (HMM E-Value=5)
Length = 256
Score = 57.6 bits (133), Expect = 8e-09
Identities = 26/56 (46%), Positives = 38/56 (67%)
Frame = +1
Query: 409 IPQWSVEFAAVSGLGKAKGVACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFE 576
+PQ+ ++ +G G + TQPRR++A+SVA+RVA E ALG VGYS+RF+
Sbjct: 1 VPQFVLDAFLENGQGAECNIVVTQPRRISAVSVAERVAAERSEALGNSVGYSVRFD 56
>SB_54154| Best HMM Match : HA2 (HMM E-Value=3.5e-22)
Length = 354
Score = 52.8 bits (121), Expect = 2e-07
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Frame = +1
Query: 409 IPQWSVEFAAVSGLGKAKGVACTQPRRVAAMSVAQRVA-EEMDVALGQEVGYSIRFED-C 582
+ Q+ ++ A G G +ACTQPRR++A+SVA+RVA E + G VGY IR E
Sbjct: 1 VAQFILDDAIQCGNGSLCRIACTQPRRISAISVAERVAIERGEQCGGGSVGYQIRLESRL 60
Query: 583 SGPQTLLKYMTDGMLLREAMSD 648
+ + Y T G+L R +SD
Sbjct: 61 PRSRGSIIYCTTGVLQRWLVSD 82
>SB_44906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 52.8 bits (121), Expect = 2e-07
Identities = 21/43 (48%), Positives = 31/43 (72%)
Frame = +1
Query: 301 RLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVE 429
R LPV+ Y+ + + ++ HQ +++ GETGSGKTTQIPQ+ E
Sbjct: 126 RRSLPVYGYREELLEAISEHQVLIIEGETGSGKTTQIPQYLYE 168
>SB_12766| Best HMM Match : Helicase_C (HMM E-Value=5.8e-09)
Length = 185
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/30 (63%), Positives = 21/30 (70%)
Frame = +1
Query: 505 VAQRVAEEMDVALGQEVGYSIRFEDCSGPQ 594
VA RVAEE D GQEVGY +RF DC P+
Sbjct: 2 VAIRVAEERDTFAGQEVGYCVRFNDCFDPK 31
>SB_52252| Best HMM Match : DEAD (HMM E-Value=0.96)
Length = 363
Score = 32.3 bits (70), Expect(2) = 0.016
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = +1
Query: 499 MSVAQRVAEEMDVALGQEVGYSIRFE 576
MSVA+RVA E +GQ GY IR E
Sbjct: 1 MSVAERVAAERGERIGQTAGYQIRLE 26
Score = 23.4 bits (48), Expect(2) = 0.016
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 592 QTLLKYMTDGMLLREAM 642
+TLL Y T+G+LLR M
Sbjct: 63 KTLLTYCTNGVLLRTLM 79
>SB_4921| Best HMM Match : Myosin_head (HMM E-Value=7.39998e-41)
Length = 1017
Score = 31.5 bits (68), Expect = 0.61
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +1
Query: 340 MRLLNTHQCIVLVGETGSGKT 402
MR N QCI++ GE+GSGKT
Sbjct: 101 MRDHNKDQCIIITGESGSGKT 121
>SB_29364| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 884
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 337 FMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSG 447
FM+ QC+++ GE+G+GKT AAVSG
Sbjct: 90 FMKRELHDQCVIISGESGAGKTESTKLILQYLAAVSG 126
>SB_52863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 301 RLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKT 402
RLGL Y + + T+ CI G TG GKT
Sbjct: 40 RLGLDSCHYNSTCVNTYGTYHCICNPGYTGDGKT 73
>SB_34413| Best HMM Match : Myosin_head (HMM E-Value=0)
Length = 650
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 340 MRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGV 468
M+ + CI++ GE+GSGKT AA++ L K K +
Sbjct: 89 MKRRSEDTCIMISGESGSGKTEASKIIMRYIAAITNLSKQKEI 131
>SB_29759| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1308
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 367 IVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGVACTQPR 486
+ ++G GSGKTT + + + G K++G C P+
Sbjct: 440 VAVIGAVGSGKTTLLSAILGQVSCTKGKIKSRGTICHVPQ 479
>SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0)
Length = 2065
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +1
Query: 349 LNTHQCIVLVGETGSGKTTQI 411
+N + ++LVGETG+GKT+ +
Sbjct: 444 INQQEPVLLVGETGTGKTSSV 464
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/52 (38%), Positives = 26/52 (50%)
Frame = +1
Query: 250 KYTGLPHSQRYHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTT 405
K G H H + +RL + VW R L + ++LVGETG GKTT
Sbjct: 1176 KVPGFGHVVWTHNM--RRLAVLVW-------RALQFGEPVLLVGETGCGKTT 1218
>SB_5844| Best HMM Match : RA (HMM E-Value=2.1e-10)
Length = 280
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Frame = +1
Query: 337 FMRLLNTH--QCIVLVGETGSGKT 402
F R+L QCIV+ GE+GSGKT
Sbjct: 223 FYRMLKEKKSQCIVISGESGSGKT 246
>SB_4502| Best HMM Match : SpoIIIAC (HMM E-Value=2.8)
Length = 82
Score = 28.7 bits (61), Expect = 4.3
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +3
Query: 201 NYQHDYHHGYQY 236
N++HDYHH YQY
Sbjct: 47 NHRHDYHHLYQY 58
>SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17)
Length = 1189
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 358 HQCIVLVGETGSGKTTQIPQWSVEFAAVSG 447
+QC+V+ GE+G+GKT AVSG
Sbjct: 918 NQCVVISGESGAGKTESTKFILQYLTAVSG 947
>SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0)
Length = 2532
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +1
Query: 346 LLNTHQCIVLVGETGSGKT 402
++N H+ ++LVGETG+ KT
Sbjct: 520 MVNIHRPVLLVGETGTSKT 538
>SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2463
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +1
Query: 310 LPVWEYKNDFMRLLNTH--QCIVLVGETGSGKTT 405
L ++ K + +L T Q +VL+G +GSGKTT
Sbjct: 421 LAIYTDKTAYRNMLATRIDQSVVLMGSSGSGKTT 454
>SB_54473| Best HMM Match : DLIC (HMM E-Value=0)
Length = 1401
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 343 RLLNTHQCIVLVGETGSGKTTQI 411
R L +H+ I+L+G SGKTT I
Sbjct: 857 RKLPSHKSIILIGNDESGKTTLI 879
>SB_14248| Best HMM Match : AAA_5 (HMM E-Value=7.7e-14)
Length = 1083
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 343 RLLNTHQCIVLVGETGSGKTTQI 411
+L+ H+ ++ VG TGSGKT I
Sbjct: 591 KLVTNHKKVLCVGPTGSGKTLAI 613
>SB_32548| Best HMM Match : Myosin_head (HMM E-Value=2.9e-17)
Length = 546
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 340 MRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVS 444
MR T QC+++ GE+G+GKT + AA+S
Sbjct: 103 MREECTDQCMLISGESGAGKTEASKRILEYLAAIS 137
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,521,490
Number of Sequences: 59808
Number of extensions: 400985
Number of successful extensions: 1022
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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