Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10c13f
(649 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g62310.1 68416.m07000 RNA helicase, putative similar to SP|P5... 186 1e-47
At2g47250.1 68415.m05900 RNA helicase, putative similar to SP|P5... 181 3e-46
At2g35340.1 68415.m04333 RNA helicase, putative similar to ATP-d... 146 1e-35
At1g32490.1 68414.m04009 RNA helicase, putative similar to ATP-d... 145 2e-35
At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative si... 138 2e-33
At4g16680.1 68417.m02519 RNA helicase, putative similar to SP|Q1... 138 3e-33
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-... 128 3e-30
At4g18465.1 68417.m02740 RNA helicase, putative similar to SP|Q1... 124 5e-29
At1g26370.1 68414.m03217 RNA helicase, putative similar to SP|Q1... 118 3e-27
At1g27900.1 68414.m03419 RNA helicase, putative similar to SP|Q1... 112 2e-25
At1g58060.1 68414.m06580 helicase domain-containing protein cont... 106 1e-23
At2g01130.1 68415.m00021 helicase domain-containing protein simi... 106 1e-23
At1g33390.1 68414.m04133 helicase domain-containing protein simi... 105 3e-23
At2g35920.1 68415.m04409 helicase domain-containing protein simi... 100 7e-22
At1g48650.1 68414.m05445 helicase domain-containing protein cont... 100 7e-22
At2g30800.1 68415.m03755 DEIH-box RNA/DNA helicase, putative sim... 91 4e-19
At1g58050.1 68414.m06579 helicase domain-containing protein cont... 91 6e-19
At1g06670.1 68414.m00707 DEIH-box RNA/DNA helicase identical to ... 90 1e-18
At5g10370.1 68418.m01203 helicase domain-containing protein / IB... 87 7e-18
At4g01020.1 68417.m00137 helicase domain-containing protein / IB... 85 4e-17
At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family... 61 7e-10
At3g58160.1 68416.m06485 myosin heavy chain, putative similar to... 30 1.5
At5g46540.1 68418.m05730 ABC transporter family protein contains... 29 3.5
At3g23920.1 68416.m03005 beta-amylase, putative / 1,4-alpha-D-gl... 28 6.1
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 28 6.1
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 27 8.1
>At3g62310.1 68416.m07000 RNA helicase, putative similar to
SP|P53131 Pre-mRNA splicing factor RNA helicase PRP43
(Helicase JA1) {Saccharomyces cerevisiae}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 726
Score = 186 bits (453), Expect = 1e-47
Identities = 86/137 (62%), Positives = 110/137 (80%), Gaps = 2/137 (1%)
Frame = +1
Query: 244 LNKYTGLPHSQRYHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWS 423
+NK+ G P+SQRY+++L KR LPVW K +F++ LN +Q ++LVGETGSGKTTQIPQ+
Sbjct: 39 INKWNGKPYSQRYYDILEKRRTLPVWLQKEEFLKTLNNNQTLILVGETGSGKTTQIPQFV 98
Query: 424 VEFAAVSGLGKAKG--VACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQT 597
++ K + V CTQPRRVAAMSV++RVAEEMDV +G+EVGYSIRFEDCS P+T
Sbjct: 99 IDAVDAETSDKRRKWLVGCTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSPRT 158
Query: 598 LLKYMTDGMLLREAMSD 648
+LKY+TDGMLLREAM+D
Sbjct: 159 VLKYLTDGMLLREAMAD 175
>At2g47250.1 68415.m05900 RNA helicase, putative similar to
SP|P53131 Pre-mRNA splicing factor RNA helicase PRP43
(Helicase JA1) {Saccharomyces cerevisiae}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 729
Score = 181 bits (441), Expect = 3e-46
Identities = 84/137 (61%), Positives = 109/137 (79%), Gaps = 2/137 (1%)
Frame = +1
Query: 244 LNKYTGLPHSQRYHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWS 423
+NK+ G +SQRY E+L KR LPVW K+DF+ LN++Q ++LVGETGSGKTTQIPQ+
Sbjct: 43 INKWNGKAYSQRYFEILEKRRDLPVWLQKDDFLNTLNSNQTLILVGETGSGKTTQIPQFV 102
Query: 424 VEFAAVSGLGKAKG--VACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQT 597
++ K + V CTQPRRVAAMSV++RVA+EMDV++G+EVGYSIRFEDC+ +T
Sbjct: 103 LDAVVADNSDKGRKWLVGCTQPRRVAAMSVSRRVADEMDVSIGEEVGYSIRFEDCTSSRT 162
Query: 598 LLKYMTDGMLLREAMSD 648
+LKY+TDGMLLREAM+D
Sbjct: 163 MLKYLTDGMLLREAMAD 179
>At2g35340.1 68415.m04333 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1110
Score = 146 bits (354), Expect = 1e-35
Identities = 72/123 (58%), Positives = 90/123 (73%)
Frame = +1
Query: 280 YHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKA 459
+H L R LP++ Y++ + + HQ +++VGETGSGKTTQIPQ+ E A + LGK
Sbjct: 460 FHMLQEDRKALPIYTYRDQLLNAVKDHQVLIIVGETGSGKTTQIPQYLHE-AGYTKLGK- 517
Query: 460 KGVACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREA 639
V CTQPRRVAAMSVA RVA+EM LG EVGYSIRFEDC+ +T+LKYMTDGMLLRE
Sbjct: 518 --VGCTQPRRVAAMSVAARVAQEMGGKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREL 575
Query: 640 MSD 648
+ +
Sbjct: 576 LGE 578
>At1g32490.1 68414.m04009 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1044
Score = 145 bits (352), Expect = 2e-35
Identities = 73/133 (54%), Positives = 91/133 (68%)
Frame = +1
Query: 250 KYTGLPHSQRYHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVE 429
K L EL R LP++ Y++ ++ + HQ +V+VG+TGSGKTTQIPQ+ E
Sbjct: 384 KSQDLAEKTALEELQEVRRSLPIYTYRDQLLKAVEEHQVLVIVGDTGSGKTTQIPQYLHE 443
Query: 430 FAAVSGLGKAKGVACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKY 609
+G K V CTQPRRVAAMSVA RVA+EM V LG EVGYSIRFEDC+ +T+LKY
Sbjct: 444 ----AGYTKRGKVGCTQPRRVAAMSVAARVAQEMGVKLGHEVGYSIRFEDCTSDKTVLKY 499
Query: 610 MTDGMLLREAMSD 648
MTDGMLLRE + +
Sbjct: 500 MTDGMLLRELLGE 512
>At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative
similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain, PF00575: S1 RNA binding domain
Length = 1168
Score = 138 bits (335), Expect = 2e-33
Identities = 66/117 (56%), Positives = 90/117 (76%)
Frame = +1
Query: 298 KRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGVACT 477
+R LP+++ K + ++ ++ +Q +V++GETGSGKTTQ+ Q+ E A + GK + CT
Sbjct: 511 QRESLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAE-AGYTTKGK---IGCT 566
Query: 478 QPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAMSD 648
QPRRVAAMSVA+RVAEE LG+EVGY+IRFEDC+GP T++KYMTDGMLLRE + D
Sbjct: 567 QPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILID 623
>At4g16680.1 68417.m02519 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 883
Score = 138 bits (334), Expect = 3e-33
Identities = 66/111 (59%), Positives = 85/111 (76%)
Frame = +1
Query: 310 LPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGVACTQPRR 489
LP+ Y+ + ++L+ +Q +V+VGETGSGKTTQIPQ+ E +G K + CTQPRR
Sbjct: 222 LPIHGYREELLKLIEENQVLVIVGETGSGKTTQIPQYLQE----AGYTKRGKIGCTQPRR 277
Query: 490 VAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAM 642
VAAMSVA RVA+E+ V LG EVGYSIRFEDC+ +T++KYMTDGMLLRE +
Sbjct: 278 VAAMSVASRVAQEVGVKLGHEVGYSIRFEDCTSEKTVIKYMTDGMLLRELL 328
>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1226
Score = 128 bits (309), Expect = 3e-30
Identities = 61/120 (50%), Positives = 90/120 (75%)
Frame = +1
Query: 289 LLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGV 468
+ +R LP++ +++ ++++ +Q IV+VGETGSGKTTQ+ Q + ++G+ V
Sbjct: 526 MAEQRQYLPIFSVRDELLQVIRENQVIVVVGETGSGKTTQLTQ---DGYTINGI-----V 577
Query: 469 ACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAMSD 648
CTQPRRVAAMSVA+RV+EEM+ LG ++GY+IRFED +GP T++KYMTDG+LLRE + D
Sbjct: 578 GCTQPRRVAAMSVAKRVSEEMETELGDKIGYAIRFEDVTGPNTVIKYMTDGVLLRETLKD 637
>At4g18465.1 68417.m02740 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 704
Score = 124 bits (299), Expect = 5e-29
Identities = 62/127 (48%), Positives = 87/127 (68%), Gaps = 1/127 (0%)
Frame = +1
Query: 271 SQRYHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGL 450
S Y + ++R LPV++Y+ + + L+ H ++VGETGSGKTTQIPQ+ E G
Sbjct: 35 SYGYANIEKQRQRLPVYKYRTEILYLVENHATTIIVGETGSGKTTQIPQYLKEAGWAEG- 93
Query: 451 GKAKGVACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFED-CSGPQTLLKYMTDGML 627
+ +ACTQPRR+A +V+ RVAEEM V LG+EVGY+IRFED + T +K++TDG+L
Sbjct: 94 --GRVIACTQPRRLAVQAVSARVAEEMGVNLGEEVGYTIRFEDHTTSGVTSVKFLTDGVL 151
Query: 628 LREAMSD 648
+RE M D
Sbjct: 152 IREMMED 158
>At1g26370.1 68414.m03217 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 717
Score = 118 bits (285), Expect = 3e-27
Identities = 65/137 (47%), Positives = 88/137 (64%)
Frame = +1
Query: 238 PGLNKYTGLPHSQRYHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQ 417
P T P S R ++ R LP+ + + + + +++VGETGSGKTTQ+PQ
Sbjct: 18 PNPKSPTVSPFSMR-QKIAEHRRSLPIASVEKRLVEEVQKNDILIIVGETGSGKTTQLPQ 76
Query: 418 WSVEFAAVSGLGKAKGVACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQT 597
+ A GK G+ TQPRR+AA++VA+RVAEE +V LGQ+VGYSIRF+D + T
Sbjct: 77 FLYN-AGFCREGKMIGI--TQPRRIAAVTVAKRVAEECEVQLGQKVGYSIRFDDTTSGST 133
Query: 598 LLKYMTDGMLLREAMSD 648
LKYMTDG+LLREA+ D
Sbjct: 134 RLKYMTDGLLLREALLD 150
>At1g27900.1 68414.m03419 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 700
Score = 112 bits (270), Expect = 2e-25
Identities = 54/113 (47%), Positives = 83/113 (73%)
Frame = +1
Query: 310 LPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGVACTQPRR 489
LP+ +++ + + + +V++GETGSGK+TQ+ Q G K+ +A TQPRR
Sbjct: 4 LPILQFEEKIVETVEKNSVVVIIGETGSGKSTQLSQ----ILHRHGYTKSGVIAITQPRR 59
Query: 490 VAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAMSD 648
VAA+SVA+RVA+E+DV LG++VGY+IRFED + +T +KY+TDG+LLRE++S+
Sbjct: 60 VAAVSVARRVAQELDVPLGEDVGYAIRFEDRTTSKTRIKYLTDGVLLRESLSN 112
>At1g58060.1 68414.m06580 helicase domain-containing protein
contains similarity to SP|P24785 Dosage compensation
regulator (Male-less protein) (No action potential
protein) {Drosophila melanogaster}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 1459
Score = 106 bits (255), Expect = 1e-23
Identities = 56/130 (43%), Positives = 82/130 (63%), Gaps = 4/130 (3%)
Frame = +1
Query: 271 SQRYHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGL 450
+Q+Y ++L+ R LP+ E KN ++ L +V+ GETGSGKTTQ+PQ+ ++ SG
Sbjct: 601 TQKYKDMLKTRTALPISEVKNGILQHLKEKDVLVVCGETGSGKTTQVPQFILDDMIDSGH 660
Query: 451 GKAKGVACTQPRRVAAMSVAQRVAEE-MDVALGQE---VGYSIRFEDCSGPQTLLKYMTD 618
G + CTQPRR+AA+SVAQRVA+E + + G + VGY +R E +T L + T
Sbjct: 661 GGYCNIICTQPRRIAAISVAQRVADERCESSPGLDDSLVGYQVRLESARSDKTRLLFCTT 720
Query: 619 GMLLREAMSD 648
G+LLR+ D
Sbjct: 721 GILLRKLAGD 730
>At2g01130.1 68415.m00021 helicase domain-containing protein similar
to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
GI:5881579; contains Pfam profiles PF04408: Helicase
associated domain (HA2), PF00271: Helicase conserved
C-terminal domain
Length = 1112
Score = 106 bits (254), Expect = 1e-23
Identities = 51/120 (42%), Positives = 74/120 (61%)
Frame = +1
Query: 289 LLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGV 468
+L R LP ++ ++ + ++ +Q IV+ GETG GKTTQIPQ+ +E + G +
Sbjct: 212 MLDSRTSLPAFKQRHSVLTAISQNQVIVISGETGCGKTTQIPQFILESEIEANRGAFSSI 271
Query: 469 ACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAMSD 648
CTQPRR++AMSV++RVA E LG+ VGY +R E G T L + T G+LLR + D
Sbjct: 272 ICTQPRRISAMSVSERVAYERGEQLGESVGYKVRLEGVKGRDTRLLFCTTGILLRRLLVD 331
>At1g33390.1 68414.m04133 helicase domain-containing protein similar
to kurz protein [Drosophila melanogaster] GI:5869803;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1237
Score = 105 bits (252), Expect = 3e-23
Identities = 51/129 (39%), Positives = 80/129 (62%), Gaps = 2/129 (1%)
Frame = +1
Query: 268 HSQRYHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVE--FAAV 441
H R E+ R LP+ + + M +N H +++ G+TG GKTTQ+PQ+ E F +
Sbjct: 227 HVSRPAEVEETRKDLPIVMMEQEIMEAINRHPAVIISGQTGCGKTTQVPQFLYEAGFGSK 286
Query: 442 SGLGKAKGVACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKYMTDG 621
++ + TQPRRVA ++ A+RVA E+ V LG+EVG+ +R++ G + +K+MTDG
Sbjct: 287 QFSSRSGIIGITQPRRVAVLATAKRVAFELGVRLGKEVGFQVRYDKKIGENSSIKFMTDG 346
Query: 622 MLLREAMSD 648
+LLRE +D
Sbjct: 347 ILLREIQND 355
>At2g35920.1 68415.m04409 helicase domain-containing protein similar
to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
GI:5881579; contains Pfam profiles PF04408: Helicase
associated domain (HA2), PF00271: Helicase conserved
C-terminal domain
Length = 995
Score = 100 bits (240), Expect = 7e-22
Identities = 48/113 (42%), Positives = 72/113 (63%)
Frame = +1
Query: 310 LPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGVACTQPRR 489
LP ++ K +F+ ++ +Q +V+ GETG GKTTQ+PQ+ +E S G + CTQPRR
Sbjct: 228 LPAFKMKEEFLNSVSQNQVLVVSGETGCGKTTQLPQFILEEEISSLRGADCNIICTQPRR 287
Query: 490 VAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAMSD 648
++A+SVA R++ E ++G+ VGY IR E QT L + T G+LLR + D
Sbjct: 288 ISAISVASRISAERGESIGESVGYQIRLESKRSDQTRLLFCTTGVLLRRLIED 340
>At1g48650.1 68414.m05445 helicase domain-containing protein
contains similarity to DEIH-box RNA/DNA helicase
[Arabidopsis thaliana] GI:5881579; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain, PF00035:
Double-stranded RNA binding motif
Length = 1197
Score = 100 bits (240), Expect = 7e-22
Identities = 47/116 (40%), Positives = 72/116 (62%)
Frame = +1
Query: 301 RLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGVACTQ 480
R LP ++ K+ ++ + +Q +V+ GETG GKTTQ+PQ+ +E + G + CTQ
Sbjct: 296 RKTLPAYKEKDALLKAIAANQVVVVSGETGCGKTTQLPQYILESEIEAARGATCSIICTQ 355
Query: 481 PRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAMSD 648
PRR++A+SV++RVA E +G+ VGY +R E G T L + T G+LLR + D
Sbjct: 356 PRRISAISVSERVAAERGEQIGESVGYKVRLEGMRGRDTRLLFCTTGVLLRRLLVD 411
>At2g30800.1 68415.m03755 DEIH-box RNA/DNA helicase, putative
similar to DEIH-box RNA/DNA helicase [Arabidopsis
thaliana] GI:5881579; contains Pfam profiles PF04408:
Helicase associated domain (HA2), PF00271: Helicase
conserved C-terminal domain
Length = 1299
Score = 91.5 bits (217), Expect = 4e-19
Identities = 42/116 (36%), Positives = 74/116 (63%)
Frame = +1
Query: 286 ELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKG 465
E+ + R LP+ +K+ + ++Q I++ GETG GKTTQ+PQ+ ++ S K
Sbjct: 179 EITKLRSKLPITSFKDAITSAVESNQVILISGETGCGKTTQVPQYLLDHMWSSKRETCK- 237
Query: 466 VACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLR 633
+ CTQPRR++AMSV++R++ E ++G+ +GY +R + G + + + T+G+LLR
Sbjct: 238 IVCTQPRRISAMSVSERISCERGESIGENIGYKVRLQSKGGRHSSVVFCTNGILLR 293
>At1g58050.1 68414.m06579 helicase domain-containing protein
contains similarity to SP|P24785 Dosage compensation
regulator (Male-less protein) (No action potential
protein) {Drosophila melanogaster}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 1417
Score = 91.1 bits (216), Expect = 6e-19
Identities = 51/129 (39%), Positives = 78/129 (60%), Gaps = 4/129 (3%)
Frame = +1
Query: 274 QRYHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLG 453
Q+Y ++L+ R LP+ E K D ++ L +V+ GETGSGKTTQ+PQ+ ++ SG G
Sbjct: 585 QKYKDMLKTRAALPISEVKKDILQKLKEKDVLVVCGETGSGKTTQVPQFILDDMIDSGHG 644
Query: 454 KAKGVACTQPRRVAAMSVAQRVAEE-MDVALGQE---VGYSIRFEDCSGPQTLLKYMTDG 621
+ CTQPR A++VAQRVA+E + G + V Y +R ++ +T L + T G
Sbjct: 645 GYCNIICTQPR---AITVAQRVADERCEPPPGFDNSVVAYQVRHQNARSDKTRLLFCTTG 701
Query: 622 MLLREAMSD 648
+LLR+ + D
Sbjct: 702 ILLRKLVGD 710
>At1g06670.1 68414.m00707 DEIH-box RNA/DNA helicase identical to
DEIH-box RNA/DNA helicase GB:BAA84364 GI:5881579
[Arabidopsis thaliana]
Length = 1576
Score = 90.2 bits (214), Expect = 1e-18
Identities = 41/124 (33%), Positives = 76/124 (61%)
Frame = +1
Query: 262 LPHSQRYHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAV 441
L + + E+ R LP+ +++ + + ++Q +++ GETG GKTTQ+PQ+ ++
Sbjct: 201 LKKERHFREIFEARSKLPIASFRDAIISAVESNQVVLIAGETGCGKTTQVPQYLLDHMWH 260
Query: 442 SGLGKAKGVACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKYMTDG 621
S K + CTQPRR++A+SV+ R++ E +G+ VGY +R + G ++ + + T+G
Sbjct: 261 SKKEACK-IICTQPRRISAISVSDRISWERGETIGRTVGYKVRLQSEGGRESSVVFCTNG 319
Query: 622 MLLR 633
+LLR
Sbjct: 320 ILLR 323
>At5g10370.1 68418.m01203 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to RNA-dependent ATPase/helicase Cdc28p
[Schizosaccharomyces pombe] GI:1439562; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain, weak hit
to PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1775
Score = 87.4 bits (207), Expect = 7e-18
Identities = 50/131 (38%), Positives = 78/131 (59%), Gaps = 6/131 (4%)
Frame = +1
Query: 274 QRYHELLRK---RL--GLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAA 438
+R H L+R+ RL GLP++ Y+ ++ ++ Q +VL+GETGSGK+TQ+ V+F A
Sbjct: 289 RRIHCLIRRECRRLEDGLPIYAYRRQILKKIHREQIMVLIGETGSGKSTQL----VQFLA 344
Query: 439 VSGLGKAKGVACTQPRRVAAMSVAQRVAEEMDVALGQE-VGYSIRFEDCSGPQTLLKYMT 615
SG+ ++ + CTQPR++AAM++A RV EE + V + F + + YMT
Sbjct: 345 DSGVAASESIVCTQPRKIAAMTLADRVREESSGCYEENTVSCTPTFSSTEEISSKVVYMT 404
Query: 616 DGMLLREAMSD 648
D LL+ M D
Sbjct: 405 DNCLLQHYMKD 415
>At4g01020.1 68417.m00137 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1787
Score = 85.0 bits (201), Expect = 4e-17
Identities = 45/122 (36%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Frame = +1
Query: 286 ELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKG 465
E R GLP++ Y+ ++ ++ Q +VL+GETGSGK+TQ+ V+F A SG+ ++
Sbjct: 295 ECRRLEDGLPIYAYRRQILKKIHCEQIMVLIGETGSGKSTQL----VQFLADSGVAASES 350
Query: 466 VACTQPRRVAAMSVAQRVAEEMDVALGQE-VGYSIRFEDCSGPQTLLKYMTDGMLLREAM 642
+ CTQPR++AAM++ RV EE + V + F + + YMTD LL+ M
Sbjct: 351 IVCTQPRKIAAMTLTDRVREESSGCYEENTVSCTPTFSSTEEISSKVVYMTDNCLLQHYM 410
Query: 643 SD 648
D
Sbjct: 411 KD 412
>At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family
protein similar to SP|Q28141 ATP-dependent RNA helicase
A (Nuclear DNA helicase II) (DEAD-box protein 9) {Bos
taurus}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 1015
Score = 60.9 bits (141), Expect = 7e-10
Identities = 35/111 (31%), Positives = 59/111 (53%)
Frame = +1
Query: 310 LPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGVACTQPRR 489
LP+ K + + ++ ++VGE G GK++Q+PQ+ +E + CTQPRR
Sbjct: 26 LPIMAMKRRIIDKILENRVTLIVGEPGCGKSSQVPQFLLE-------ANMAPILCTQPRR 78
Query: 490 VAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAM 642
A ++VA+ VA+ + LG E+GY I + + + T G+LL E +
Sbjct: 79 FAVVAVAKMVAKSRNSDLGGEIGYHIGHSKILTEGSKILFKTAGVLLDEML 129
>At3g58160.1 68416.m06485 myosin heavy chain, putative similar to
myosin heavy chain [Arabidopsis thaliana]
gi|602328|emb|CAA84067.
Length = 1242
Score = 29.9 bits (64), Expect = 1.5
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Frame = +1
Query: 244 LNKYTGLPH------SQRYHELLRKRLGLPVWEYKN-DFMRLLNT--HQCIVLVGETGSG 396
+N + GLPH ++Y E K L V+ + ++N ++CI++ GE+GSG
Sbjct: 100 VNPFQGLPHLYDAEVMEKYKEAYFKELNPHVFAIGGIAYREMINEGRNKCILVSGESGSG 159
Query: 397 KT 402
KT
Sbjct: 160 KT 161
>At5g46540.1 68418.m05730 ABC transporter family protein contains Pfam
profile: PF00005 ABC transporter; similar to
multidrug-resistant protein CjMDR1 GI:14715462 from
[Coptis japonica]
Length = 1248
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 331 NDFMRLLNTHQCIVLVGETGSGKTTQI 411
+D +++ Q + LVGE+GSGK+T I
Sbjct: 1024 SDLCLTISSGQTVALVGESGSGKSTVI 1050
>At3g23920.1 68416.m03005 beta-amylase, putative /
1,4-alpha-D-glucan maltohydrolase, putative similar to
beta-amylase enzyme [Arabidopsis thaliana] GI:6065749,
beta-amylase PCT-BMYI from [Solanum tuberosum]; contains
Pfam profile PF01373: Glycosyl hydrolase family 14
Length = 575
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +1
Query: 280 YHELLR--KRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVE 429
Y+ELL K+LGL V +++ HQC G G T +PQW VE
Sbjct: 166 YNELLELAKKLGLKV-------QAVMSFHQC---GGNVGDSVTIPLPQWVVE 207
>At1g67120.1 68414.m07636 midasin-related similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q12019)
[Saccharomyces cerevisiae]; similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
sapiens]; contains Prosite PS00017: ATP/GTP-binding site
motif A (P-loop)
Length = 5336
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +1
Query: 343 RLLNTHQCIVLVGETGSGKTTQI 411
R + ++ ++LVGETG+GKTT +
Sbjct: 662 RSVEYNEPVLLVGETGTGKTTLV 684
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 27.5 bits (58), Expect = 8.1
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +3
Query: 495 CYVCCSEGSRRNGC 536
CY C EG R NGC
Sbjct: 62 CYFCSEEGHRSNGC 75
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,631,757
Number of Sequences: 28952
Number of extensions: 272794
Number of successful extensions: 817
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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