Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10c12r
(770 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g49400.1 68416.m05400 transducin family protein / WD-40 repea... 34 0.090
At5g63450.1 68418.m07965 cytochrome P450, putative 30 1.5
At5g56690.1 68418.m07076 F-box family protein contains F-box dom... 30 1.5
At3g48520.1 68416.m05296 cytochrome P450 family protein similar ... 30 1.9
At4g39510.1 68417.m05587 cytochrome P450 family protein contains... 29 2.6
At2g23240.2 68415.m02776 plant EC metallothionein-like family 15... 29 3.4
At2g23240.1 68415.m02775 plant EC metallothionein-like family 15... 29 3.4
At5g64820.1 68418.m08155 hypothetical protein 29 4.5
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-... 29 4.5
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 29 4.5
At5g03800.1 68418.m00347 exostosin family protein / pentatricope... 28 5.9
At4g00730.1 68417.m00099 anthocyaninless2 (ANL2) nearly identica... 28 5.9
At5g16590.1 68418.m01942 leucine-rich repeat transmembrane prote... 28 7.9
At1g06550.1 68414.m00694 enoyl-CoA hydratase/isomerase family pr... 28 7.9
>At3g49400.1 68416.m05400 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400); low
similarity (47%) to Agamous-like MADS box protein AGL5
(SP:P29385) {Arabidopsis thaliana}
Length = 892
Score = 34.3 bits (75), Expect = 0.090
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Frame = +2
Query: 374 LPQSNELPADFRACFVLTVAEGKSAIVAV--------NIITQRQSETVALVHKLNGVFGE 529
L + +LP DF +C + ++ G A+ V N + Q +S+ A+ NG
Sbjct: 482 LSSTTDLPDDFLSCLGVALSPGNLAVALVRNFNVELLNPMYQARSQKAAVEFLWNGAQQS 541
Query: 530 DKSELNWETITDDVLG 577
+SE + ET+T+ +LG
Sbjct: 542 GESEDSTETVTEAILG 557
>At5g63450.1 68418.m07965 cytochrome P450, putative
Length = 510
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = -2
Query: 427 GKDKTSPKVSWKFIALWENNKVYFKILNTERNQYLVLGVG 308
G+D TS ++W F L +N+ V KIL+ RN+ LG+G
Sbjct: 306 GRDTTSAAMTWLFWLLSQNDDVETKILDELRNKG-SLGLG 344
>At5g56690.1 68418.m07076 F-box family protein contains F-box domain
Pfam:PF00646
Length = 402
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = -2
Query: 373 NNKVYFKILNTERNQYLVLGVGTNPNGDHMAFGVNSVDSFRAQWYLQPAKYDKDNLFYIY 194
N+K ++K + +YL + N F +NS+++FR +WY + D+D L I+
Sbjct: 333 NSKSFYK---EKIGEYLPVSWSKNQGSVPKCF-LNSLETFRVKWYYSEEQEDRDFLSLIF 388
>At3g48520.1 68416.m05296 cytochrome P450 family protein similar to
Cytochrome P450 94A1 (P450-dependent fatty acid
omega-hydroxylase) (SP:O81117) {Vicia sativa}; contains
Pfam profile: PF00067 cytochrome P450
Length = 506
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = -2
Query: 427 GKDKTSPKVSWKFIALWENNKVYFKILNTERNQYLVLGVG 308
G+D TS ++W F L EN+ V KIL E + + LG+G
Sbjct: 304 GRDTTSAAMTWLFWLLTENDDVERKILE-EVDPLVSLGLG 342
>At4g39510.1 68417.m05587 cytochrome P450 family protein contains
Pfam PF00067: Cytochrome P450; similar to Cytochrome
P450 86A2 (SP:O23066) [Arabidopsis thaliana]
Length = 508
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -2
Query: 481 LTLSNDVHGNDGRLAFG-DGKDKTSPKVSWKFIALWENNKVYFKI 350
L S+D D LAF G+D TS +SW F L EN +V KI
Sbjct: 293 LNPSDDKFLRDTILAFNLAGRDTTSSALSWFFWLLSENPQVVTKI 337
>At2g23240.2 68415.m02776 plant EC metallothionein-like family 15
protein identical to EC protein homolog 2 (SP:Q42377)
{Arabidopsis thaliana}; identical to an EST:
GB:X92116:ATECPRHOM; contains a vertebrate
metallothionein signature (PS00203); contains Pfam
profile PF02068: Plant PEC family metallothionein
Length = 84
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +1
Query: 115 HCIPRPCGYPRFQAS*TVSKPC-CIHGCRCRT 207
HC PC P+ Q T +K C C GC C T
Sbjct: 51 HCGCNPCNCPKTQTQ-TSAKGCTCGEGCTCAT 81
>At2g23240.1 68415.m02775 plant EC metallothionein-like family 15
protein identical to EC protein homolog 2 (SP:Q42377)
{Arabidopsis thaliana}; identical to an EST:
GB:X92116:ATECPRHOM; contains a vertebrate
metallothionein signature (PS00203); contains Pfam
profile PF02068: Plant PEC family metallothionein
Length = 85
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +1
Query: 115 HCIPRPCGYPRFQAS*TVSKPC-CIHGCRCRT 207
HC PC P+ Q T +K C C GC C T
Sbjct: 52 HCGCNPCNCPKTQTQ-TSAKGCTCGEGCTCAT 82
>At5g64820.1 68418.m08155 hypothetical protein
Length = 145
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +2
Query: 413 CFVLTVAEGKSAIVAVNIITQRQSETVALVHKLNGVFGEDKSELNWETI 559
C ++ + G SA A + ++ E ++V ++G+FG +WE I
Sbjct: 15 CIIIILISGVSADGAESDSAAKKEENPSIVKIISGIFGNKFPPSSWELI 63
>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1226
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +2
Query: 278 EGHVVAVRVSTDSQYQILVTLSVQDLEVDLVVLPQSNELPADFRACFVLTVAEG-KSAIV 454
+ + A S + + LV+ S +++ +L++LP ++LPAD +A +G + IV
Sbjct: 747 QDEIEAACFSLKERMEQLVSSSSREI-TNLLILPIYSQLPADLQAKIFQKPEDGARKCIV 805
Query: 455 AVNI 466
A NI
Sbjct: 806 ATNI 809
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 28.7 bits (61), Expect = 4.5
Identities = 22/71 (30%), Positives = 33/71 (46%)
Frame = +2
Query: 359 VDLVVLPQSNELPADFRACFVLTVAEGKSAIVAVNIITQRQSETVALVHKLNGVFGEDKS 538
VDLV+ P D+ T G+ + AV+IIT+ V L+HK+ G+
Sbjct: 371 VDLVINYDIPRDPRDYVHRVGRTARAGRGGL-AVSIITETD---VKLIHKIEEEVGKKME 426
Query: 539 ELNWETITDDV 571
N + ITD +
Sbjct: 427 PYNKKVITDSL 437
>At5g03800.1 68418.m00347 exostosin family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF03016 exostosin family,
PF01535 PPR repeat
Length = 1388
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 315 PNTKYWLRSVFKILK*TLLFSHRAMNFQLTFGLV 416
PNT+Y L+ V + +K + LF H A +T+G++
Sbjct: 806 PNTEYVLQEVDEFMKKSFLFHHSA-KLAVTYGIL 838
>At4g00730.1 68417.m00099 anthocyaninless2 (ANL2) nearly identical
to Anthocyaninless2 [Arabidopsis thaliana] GI:5702094
Length = 802
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -2
Query: 346 NTERNQYLVLGVGTNPNGDHMAF 278
N N L L VGTN NG H AF
Sbjct: 270 NHHYNSSLELAVGTNNNGGHFAF 292
>At5g16590.1 68418.m01942 leucine-rich repeat transmembrane protein
kinase, putative
Length = 625
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +2
Query: 509 LNGVFGEDKSELNWETITDDVLGALEPKLIGVLHAVHLVVSY 634
L+G G +S LNWET + LGA + I LH+ S+
Sbjct: 427 LHGNKGSGRSPLNWETRANIALGA--ARAISYLHSRDATTSH 466
>At1g06550.1 68414.m00694 enoyl-CoA hydratase/isomerase family
protein similar to CHY1 [gi:8572760]; contains Pfam
profile PF00388 enoyl-CoA hydratase/isomerase family
protein
Length = 387
Score = 27.9 bits (59), Expect = 7.9
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 4/118 (3%)
Frame = -2
Query: 667 SEVITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRL---IFAENAIKLMYK 497
+E IT V+ L R++ ++ Q +G K + DC EFRL I + MY
Sbjct: 263 NEWITPVIKGLKRSSPTG-LKIVLQSIREGRKQTLSDCLKKEFRLTLNILRKTISPDMY- 320
Query: 496 RDGL-ALTLSNDVHGNDGRLAFGDGKDKTSPKVSWKFIALWENNKVYFKILNTERNQY 326
+G+ ALT+ D + D+ K++ F L+E++ + +I TE N++
Sbjct: 321 -EGIRALTIDKDNSPKWNPATLDEVDDE---KINSVF-KLFEDDDIELQIPETEENRW 373
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,401,649
Number of Sequences: 28952
Number of extensions: 309765
Number of successful extensions: 1076
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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