Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c12f
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    32   0.077
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    31   0.13 
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    29   0.54 
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    28   1.3  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   1.7  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    27   2.9  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   2.9  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   2.9  
SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe...    25   6.7  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   8.8  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 31.9 bits (69), Expect = 0.077
 Identities = 29/117 (24%), Positives = 54/117 (46%)
 Frame = +3

Query: 96  IPTSLTTFWRSSFTIASSLPITTVRLKRASIYTRRRRAKSSQM**TN*YETTR*TAWSTP 275
           +P + T    S++TI+SS P+T+  +   +  T      +S    +    TT  T  ST 
Sbjct: 502 VPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTT-STS 560

Query: 276 INFGSRAPRTSSVIVSQLSSDLSSPKTPLSLCTSATVSL*R*VMMFTATMADLPSAT 446
           + + S    +S+  +S  +   S+P T  +  TS +V       ++T+T    P++T
Sbjct: 561 VPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSV-------LYTSTPITSPNST 610


>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
 Frame = +2

Query: 119 LEEQLYNSIVVADYDSAVE--KSKH--LYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLW 286
           L E   +  V  D +S  E  K KH  + + +KS + ++   K+++ NK+N +E A Q W
Sbjct: 110 LAESNSSVAVEGDENSYAETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNW 169

Query: 287 LQGSKD 304
            +  K+
Sbjct: 170 SKYIKE 175


>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +2

Query: 470 VSWKFIALWENNKVYFKILNTERNQYLVLGVGTNPNG 580
           + +K I L++NN+   KILN  R    V+ VGT  NG
Sbjct: 254 IFFKCIPLFKNNEEAEKILNVNRLLDRVMFVGTKVNG 290


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 455 KTSPKVSWKFIALWENNKVYFKILNTERNQYLVLGVGTN 571
           K SPKV+WK   +W + K   K +++      +LG G++
Sbjct: 28  KASPKVNWKTHIIWRSLK-NVKCIDSFHGNNEILGAGSS 65


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 128 QLYNSIVVADYDSAVEKSKHLYEEKKS 208
           QL N     DY+   E++K LY+E+KS
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKS 210


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 200 KKSEVITNVVNKLIRNNKMNCMEYAYQLWLQ 292
           K+   +T+  NKL+ ++  +  +YAY L LQ
Sbjct: 35  KREAQLTDTPNKLLTDHDQSASDYAYALKLQ 65


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
 Frame = +3

Query: 96  IPTSLTTFWRSSFTIASSLPITTVRLKRA-SIYTRRRRAKSSQM**TN*YETTR*TAWST 272
           +PTS  TF  S F   S LP ++     + S         SS    T+   T+   + ST
Sbjct: 677 VPTS--TFTSSGFNTTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTTSGLPTS---SVST 731

Query: 273 PINFGSRAPRTSSVIVSQLSSDLSSPKTP 359
           P++  S  P + S   S+LSS L+S   P
Sbjct: 732 PLSNSSAYPSSGSSTFSRLSSTLTSSIIP 760



 Score = 25.8 bits (54), Expect = 5.1
 Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
 Frame = +3

Query: 102 TSLTTFWRSSFTIASSLPITTVRLKRASIYTRRRRAKSSQM**TN*YETTR*TAWSTPIN 281
           T LT+   ++ T ASS P+T+V    A+       A S+ +   N   +T  ++ +   N
Sbjct: 357 TPLTSVNSTTATSASSTPLTSVNSTSAT------SASSTPLTSANSTTSTSVSSTAPSYN 410

Query: 282 FGSRAPRTSSVIVSQLSS-----DLSSPKTPLSLCTSATVS 389
             S  P TSSV  + LSS       S+  TPLS   S T +
Sbjct: 411 TSSVLP-TSSVSSTPLSSANSTTATSASSTPLSSVNSTTAT 450


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 288 SRAPRTSSVIVSQLSSDLSSP-KTPLSLCTSATVS 389
           S  P T S + S LSS  SSP  T LS+ +S+T S
Sbjct: 567 SSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSS 601


>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 182

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 553 YQILVTLSVQDLEVDLVVLPQSNELPADF 467
           +Q+ V  ++QDL+  L   PQ N L  +F
Sbjct: 3   FQVRVKQNMQDLDNRLAAFPQLNSLEKNF 31


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -3

Query: 388  ETVALVHKLNGVFGEDKSELNWETITDDVLGALEPKL 278
            E V  +H L+  F ED+ E   E I  DV  A++PKL
Sbjct: 2004 ELVTTLHSLDVFFAEDRDE---ELIQPDV--AVDPKL 2035


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,334,813
Number of Sequences: 5004
Number of extensions: 44357
Number of successful extensions: 180
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)