Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c12f
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical p...    30   1.2  
Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical p...    30   1.2  
Z81507-1|CAB04133.1|  485|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AF036698-2|AAB88353.1|  485|Caenorhabditis elegans Puf (pumilio/...    30   1.5  
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    29   2.7  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    29   2.7  
L12018-1|AAA65458.1|  518|Caenorhabditis elegans Polk (dna polym...    28   6.2  
Z81083-2|CAB03101.3|  646|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z74034-4|CAE17842.2|  319|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical
           protein ZK1320.12b protein.
          Length = 497

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 155 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 265
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical
           protein ZK1320.12a protein.
          Length = 495

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 155 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 265
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>Z81507-1|CAB04133.1|  485|Caenorhabditis elegans Hypothetical
           protein F18A11.1 protein.
          Length = 485

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +2

Query: 212 VITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGL 388
           ++  V+++L  N K+ C ++  QL       IVR+C+ +     FA   I+ + K  G+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN-EFANYVIQYVIKSSGI 314


>AF036698-2|AAB88353.1|  485|Caenorhabditis elegans Puf
           (pumilio/fbf) domain-containingprotein 7 protein.
          Length = 485

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +2

Query: 212 VITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGL 388
           ++  V+++L  N K+ C ++  QL       IVR+C+ +     FA   I+ + K  G+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN-EFANYVIQYVIKSSGI 314


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
            protein 1 protein.
          Length = 4568

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
 Frame = +2

Query: 35   PKMKPVIVILCLFVASLYAADSD-VPNDILEEQLY--NSIVVADYDSAVEKSKH-LYEEK 202
            P +K V+V LC+   +LY + S     + + EQLY  +S+  A    + ++ +  + EE 
Sbjct: 922  PTVKNVVVDLCMTAQTLYISPSTRETREKILEQLYEWHSVCTAQMRISGKRFQMVMNEEI 981

Query: 203  KSEVITNVVNKLIRNNKMNCMEYAY 277
            + E   N++N  +      C+E AY
Sbjct: 982  EPETYHNILN--VMPEGQACLEKAY 1004


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
            protein.
          Length = 4568

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
 Frame = +2

Query: 35   PKMKPVIVILCLFVASLYAADSD-VPNDILEEQLY--NSIVVADYDSAVEKSKH-LYEEK 202
            P +K V+V LC+   +LY + S     + + EQLY  +S+  A    + ++ +  + EE 
Sbjct: 922  PTVKNVVVDLCMTAQTLYISPSTRETREKILEQLYEWHSVCTAQMRISGKRFQMVMNEEI 981

Query: 203  KSEVITNVVNKLIRNNKMNCMEYAY 277
            + E   N++N  +      C+E AY
Sbjct: 982  EPETYHNILN--VMPEGQACLEKAY 1004


>L12018-1|AAA65458.1|  518|Caenorhabditis elegans Polk (dna
           polymerase kappa) homologprotein 1 protein.
          Length = 518

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +2

Query: 152 ADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNN--KMNCMEYAYQLWLQGSKDIVRDCFP 325
           A Y S  +K +   EEK  E I N +    R    K   +    ++ L+ S+D+ RDC  
Sbjct: 29  ASYSSFSKKQQSRIEEKVLE-IKNRLQTATREERQKSEILMENLEMKLESSRDLSRDCVC 87

Query: 326 VEFRLIFA 349
           ++    FA
Sbjct: 88  IDMDAYFA 95


>Z81083-2|CAB03101.3|  646|Caenorhabditis elegans Hypothetical
           protein F44F1.3 protein.
          Length = 646

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -3

Query: 373 VHKLNGVFGEDKSELNWETITDDVLGA-LEP 284
           VHK+NG+F ++K  +  E I D      LEP
Sbjct: 419 VHKINGIFSDNKKVVACEIINDSTQDIDLEP 449


>Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical
           protein C44H9.4 protein.
          Length = 1099

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 506 KVYFKILNTERNQYLVLGVGTNPNGDH 586
           + YF++L+ E N+Y+++    N +G H
Sbjct: 156 RAYFRVLSAEDNKYILIACHANLHGLH 182


>Z74034-4|CAE17842.2|  319|Caenorhabditis elegans Hypothetical
           protein F43A11.3 protein.
          Length = 319

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +2

Query: 260 CMEYAYQLWL---QGSKDIVRDCFPVEFRLIFA 349
           C+ Y Y+L +     +KD+ RDCF   F + FA
Sbjct: 139 CLFYVYRLTIVIYMTAKDVARDCFYSFFPITFA 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,926,860
Number of Sequences: 27780
Number of extensions: 252246
Number of successful extensions: 976
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)