Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c12f
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   5.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   5.5  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   7.3  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   7.3  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   7.3  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   9.7  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 104 VPNDILEEQLYNSIVVADYDSAVEK 178
           VP+++  + LYN +VV++  S   K
Sbjct: 566 VPDEVPSDVLYNRLVVSEDGSETFK 590


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 104 VPNDILEEQLYNSIVVADYDSAVEK 178
           VP+++  + LYN +VV++  S   K
Sbjct: 566 VPDEVPSDVLYNRLVVSEDGSETFK 590


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +2

Query: 509 VYFKILNTERNQYLVLGVGTNPNGDHMAFGVN 604
           V F+I+N   N+ ++     NP+ D   F ++
Sbjct: 398 VNFRIMNANVNELILNTRCENPDNDRTPFKIS 429


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +2

Query: 509 VYFKILNTERNQYLVLGVGTNPNGDHMAFGVN 604
           V F+I+N   N+ ++     NP+ D   F ++
Sbjct: 398 VNFRIMNANVNELILNTRCENPDNDRTPFKIS 429


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +2

Query: 509 VYFKILNTERNQYLVLGVGTNPNGDHMAFGVN 604
           V F+I+N   N+ ++     NP+ D   F ++
Sbjct: 398 VNFRIMNANVNELILNTRCENPDNDRTPFKIS 429


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 518 KILNTERNQYLVLGVGTNPN 577
           ++ NT+RN+YL+     N N
Sbjct: 366 RVNNTQRNEYLLALSDRNQN 385


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,001
Number of Sequences: 438
Number of extensions: 3022
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)