Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10c12f
(621 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g49400.1 68416.m05400 transducin family protein / WD-40 repea... 34 0.066
At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein b... 31 0.81
At5g63450.1 68418.m07965 cytochrome P450, putative 30 1.1
At3g48520.1 68416.m05296 cytochrome P450 family protein similar ... 30 1.4
At4g39510.1 68417.m05587 cytochrome P450 family protein contains... 29 1.9
At5g64820.1 68418.m08155 hypothetical protein 29 3.3
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-... 29 3.3
At3g30550.1 68416.m03866 hypothetical protein includes At2g05890... 29 3.3
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 29 3.3
At5g03800.1 68418.m00347 exostosin family protein / pentatricope... 28 4.3
At4g00730.1 68417.m00099 anthocyaninless2 (ANL2) nearly identica... 28 4.3
At5g16590.1 68418.m01942 leucine-rich repeat transmembrane prote... 28 5.7
At2g04620.1 68415.m00470 cation efflux family protein potential ... 28 5.7
At1g06550.1 68414.m00694 enoyl-CoA hydratase/isomerase family pr... 28 5.7
At5g07400.1 68418.m00847 forkhead-associated domain-containing p... 27 7.6
At4g28590.1 68417.m04089 expressed protein 27 7.6
>At3g49400.1 68416.m05400 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400); low
similarity (47%) to Agamous-like MADS box protein AGL5
(SP:P29385) {Arabidopsis thaliana}
Length = 892
Score = 34.3 bits (75), Expect = 0.066
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Frame = -3
Query: 499 LPQSNELPADFRACFVLTVAEGKSAIVAV--------NIITQRQSETVALVHKLNGVFGE 344
L + +LP DF +C + ++ G A+ V N + Q +S+ A+ NG
Sbjct: 482 LSSTTDLPDDFLSCLGVALSPGNLAVALVRNFNVELLNPMYQARSQKAAVEFLWNGAQQS 541
Query: 343 DKSELNWETITDDVLG 296
+SE + ET+T+ +LG
Sbjct: 542 GESEDSTETVTEAILG 557
>At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein
binding region-containing protein similar to U4/U6
snRNP-associated 61 kDa protein [Homo sapiens]
GI:18249847; contains Pfam profile PF01798: Putative
snoRNA binding domain
Length = 485
Score = 30.7 bits (66), Expect = 0.81
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +2
Query: 47 PVIVILCLFVASLYAADSDVPNDILEEQLYNSIVVADYDSAVEKSKHLYEEKKSEVITNV 226
P +I+ + V +L S +P D+L++ L D DSA +K E K + N+
Sbjct: 161 PSAIIMVVSVTALTTKGSALPEDVLQKVLEACDRALDLDSARKKVLEFVESKMGSIAPNL 220
>At5g63450.1 68418.m07965 cytochrome P450, putative
Length = 510
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +2
Query: 446 GKDKTSPKVSWKFIALWENNKVYFKILNTERNQYLVLGVG 565
G+D TS ++W F L +N+ V KIL+ RN+ LG+G
Sbjct: 306 GRDTTSAAMTWLFWLLSQNDDVETKILDELRNKG-SLGLG 344
>At3g48520.1 68416.m05296 cytochrome P450 family protein similar to
Cytochrome P450 94A1 (P450-dependent fatty acid
omega-hydroxylase) (SP:O81117) {Vicia sativa}; contains
Pfam profile: PF00067 cytochrome P450
Length = 506
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +2
Query: 446 GKDKTSPKVSWKFIALWENNKVYFKILNTERNQYLVLGVG 565
G+D TS ++W F L EN+ V KIL E + + LG+G
Sbjct: 304 GRDTTSAAMTWLFWLLTENDDVERKILE-EVDPLVSLGLG 342
>At4g39510.1 68417.m05587 cytochrome P450 family protein contains
Pfam PF00067: Cytochrome P450; similar to Cytochrome
P450 86A2 (SP:O23066) [Arabidopsis thaliana]
Length = 508
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 392 LTLSNDVHGNDGRLAFG-DGKDKTSPKVSWKFIALWENNKVYFKI 523
L S+D D LAF G+D TS +SW F L EN +V KI
Sbjct: 293 LNPSDDKFLRDTILAFNLAGRDTTSSALSWFFWLLSENPQVVTKI 337
>At5g64820.1 68418.m08155 hypothetical protein
Length = 145
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -3
Query: 460 CFVLTVAEGKSAIVAVNIITQRQSETVALVHKLNGVFGEDKSELNWETI 314
C ++ + G SA A + ++ E ++V ++G+FG +WE I
Sbjct: 15 CIIIILISGVSADGAESDSAAKKEENPSIVKIISGIFGNKFPPSSWELI 63
>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1226
Score = 28.7 bits (61), Expect = 3.3
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = -3
Query: 595 EGHVVAVRVSTDSQYQILVTLSVQDLEVDLVVLPQSNELPADFRACFVLTVAEG-KSAIV 419
+ + A S + + LV+ S +++ +L++LP ++LPAD +A +G + IV
Sbjct: 747 QDEIEAACFSLKERMEQLVSSSSREI-TNLLILPIYSQLPADLQAKIFQKPEDGARKCIV 805
Query: 418 AVNI 407
A NI
Sbjct: 806 ATNI 809
>At3g30550.1 68416.m03866 hypothetical protein includes At2g05890,
At4g07450, At3g30630, At3g43100, At2g09960, At3g30550,
At1g39430, At2g10460, At4g03640, At5g35250
Length = 509
Score = 28.7 bits (61), Expect = 3.3
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +2
Query: 29 NAPKMKPVIVILCLFVASLYAA-DSDVPNDILEEQLYNSIVVADYDSAVEKSKHLYEEKK 205
N K K +LC+ +++ DS + + + + IV DYD+ V+ S + E+
Sbjct: 395 NCLKGKTFQFLLCVQRENIFGGYDSFTVARVYTDNIADEIVQEDYDAYVDPSSLISIEQD 454
Query: 206 SEVITNVVN 232
S ++TN V+
Sbjct: 455 SLMLTNGVD 463
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 28.7 bits (61), Expect = 3.3
Identities = 22/71 (30%), Positives = 33/71 (46%)
Frame = -3
Query: 514 VDLVVLPQSNELPADFRACFVLTVAEGKSAIVAVNIITQRQSETVALVHKLNGVFGEDKS 335
VDLV+ P D+ T G+ + AV+IIT+ V L+HK+ G+
Sbjct: 371 VDLVINYDIPRDPRDYVHRVGRTARAGRGGL-AVSIITETD---VKLIHKIEEEVGKKME 426
Query: 334 ELNWETITDDV 302
N + ITD +
Sbjct: 427 PYNKKVITDSL 437
>At5g03800.1 68418.m00347 exostosin family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF03016 exostosin family,
PF01535 PPR repeat
Length = 1388
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = -1
Query: 558 PNTKYWLRSVFKILK*TLLFSHRAMNFQLTFGLV 457
PNT+Y L+ V + +K + LF H A +T+G++
Sbjct: 806 PNTEYVLQEVDEFMKKSFLFHHSA-KLAVTYGIL 838
>At4g00730.1 68417.m00099 anthocyaninless2 (ANL2) nearly identical
to Anthocyaninless2 [Arabidopsis thaliana] GI:5702094
Length = 802
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +2
Query: 527 NTERNQYLVLGVGTNPNGDHMAF 595
N N L L VGTN NG H AF
Sbjct: 270 NHHYNSSLELAVGTNNNGGHFAF 292
>At5g16590.1 68418.m01942 leucine-rich repeat transmembrane protein
kinase, putative
Length = 625
Score = 27.9 bits (59), Expect = 5.7
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -3
Query: 364 LNGVFGEDKSELNWETITDDVLGALEPKLIGVLHAVHLVVSY 239
L+G G +S LNWET + LGA + I LH+ S+
Sbjct: 427 LHGNKGSGRSPLNWETRANIALGA--ARAISYLHSRDATTSH 466
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 27.9 bits (59), Expect = 5.7
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -3
Query: 136 VKLLLQNVVRDVGICSIQRCHEKT*NNYD 50
+K ++N+++ G+CSIQR H + N D
Sbjct: 727 LKEAMRNILKTKGVCSIQRLHVWSFTNSD 755
>At1g06550.1 68414.m00694 enoyl-CoA hydratase/isomerase family
protein similar to CHY1 [gi:8572760]; contains Pfam
profile PF00388 enoyl-CoA hydratase/isomerase family
protein
Length = 387
Score = 27.9 bits (59), Expect = 5.7
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 4/118 (3%)
Frame = +2
Query: 206 SEVITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRL---IFAENAIKLMYK 376
+E IT V+ L R++ ++ Q +G K + DC EFRL I + MY
Sbjct: 263 NEWITPVIKGLKRSSPTG-LKIVLQSIREGRKQTLSDCLKKEFRLTLNILRKTISPDMY- 320
Query: 377 RDGL-ALTLSNDVHGNDGRLAFGDGKDKTSPKVSWKFIALWENNKVYFKILNTERNQY 547
+G+ ALT+ D + D+ K++ F L+E++ + +I TE N++
Sbjct: 321 -EGIRALTIDKDNSPKWNPATLDEVDDE---KINSVF-KLFEDDDIELQIPETEENRW 373
>At5g07400.1 68418.m00847 forkhead-associated domain-containing
protein / FHA domain-containing protein
Length = 1084
Score = 27.5 bits (58), Expect = 7.6
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = -3
Query: 472 DFRACFVLT--VAEGKSAIVAVNIITQRQSETVALVHKLNGVFGEDKSELNWETITDDVL 299
D R FV+ V EG+ A + V++ + T + + VF ++E+N V
Sbjct: 153 DGRVGFVVQEIVFEGRDASI-VSVSSGHSRGTFSSGKRSKRVFAPMENEIN-----SPVS 206
Query: 298 GALEPKLIGVLHAVHLVVSY 239
G PK +GV+ V+ +VSY
Sbjct: 207 GFYPPKAVGVVERVNSLVSY 226
>At4g28590.1 68417.m04089 expressed protein
Length = 331
Score = 27.5 bits (58), Expect = 7.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 370 HKLNGVFGEDKSELNWETITDD 305
H + V G+D SE++WE DD
Sbjct: 180 HPIKNVVGDDGSEIDWEGEIDD 201
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,234,201
Number of Sequences: 28952
Number of extensions: 235332
Number of successful extensions: 945
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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