Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10c11f
(633 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.59
SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_36274| Best HMM Match : SH2 (HMM E-Value=9.6e-05) 28 5.5
SB_52186| Best HMM Match : IMPDH (HMM E-Value=0) 28 7.2
SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_46678| Best HMM Match : GatB_Yqey (HMM E-Value=1.9) 28 7.2
SB_24758| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-10) 28 7.2
SB_16848| Best HMM Match : Ion_trans_2 (HMM E-Value=0.083) 27 9.6
SB_24560| Best HMM Match : Ank (HMM E-Value=0) 27 9.6
SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01) 27 9.6
>SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 499
Score = 31.5 bits (68), Expect = 0.59
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +3
Query: 306 EDKLKVEKLIDACLANKGNSPHQTAWNYVKCYHEKDPK-HALFL 434
E+ + V KL D L NKG PH N ++E DPK H LF+
Sbjct: 341 EESVDVTKL-DYYLMNKGYIPHADRLNDTLHHYETDPKYHRLFI 383
>SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 776
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -1
Query: 210 SMVRFQS*SRLSSVCSPIVHQLSSRRDSRLCVSSSSPSAHL*GP 79
S + +S S SSVC ++H+LS+ R +C S A+ P
Sbjct: 430 SYIVCRSISYTSSVCRSVIHRLSANRSKTVCRSIGHTGAYTGAP 473
>SB_36274| Best HMM Match : SH2 (HMM E-Value=9.6e-05)
Length = 292
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 76 AKTTQTTNTIKVFMMHSVWDPEQ 8
A +TQTT T+K SVW+P Q
Sbjct: 28 ASSTQTTATMKTLQSASVWNPFQ 50
>SB_52186| Best HMM Match : IMPDH (HMM E-Value=0)
Length = 876
Score = 27.9 bits (59), Expect = 7.2
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Frame = +3
Query: 246 LMTKDGKFKKDVALAKVPNAEDKLKVEKLIDACL------ANKGNSPHQ 374
L +KD K + V A AEDKL+VE LI A + +++GNS +Q
Sbjct: 428 LASKDSKKQLLVGAAIGTRAEDKLRVEALIHAGVDVIILDSSQGNSAYQ 476
>SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 808
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = -2
Query: 425 SVLRVFLVVAFHIIPGCLVRAVAFVGQASVNQLLYFQFVFSIRHFSQSDVLLEFPVLGHQ 246
SVL VF+V+ +IPG V A +V N + +++VF+ Q ++L F +L +
Sbjct: 26 SVLLVFMVLLIVMIPGTWVAAAIYVKHFQDN--VIWEYVFAGSCALQGILVLLFGLLDRE 83
Query: 245 L 243
+
Sbjct: 84 I 84
>SB_46678| Best HMM Match : GatB_Yqey (HMM E-Value=1.9)
Length = 235
Score = 27.9 bits (59), Expect = 7.2
Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 5/109 (4%)
Frame = +3
Query: 57 VVCVVLAQALTDEQKENLKKHRADCLSETKADEQLVNKLK--TGDFKTE--NEPLKKYAL 224
V V+ +E +EN+ AD S + DE +VNK T + N+P
Sbjct: 28 VTGVISLYLFREELRENVADEVADVASRSLGDENVVNKANEVTKQVLQDIINDPETTRLA 87
Query: 225 CMLIKSQLMTKD-GKFKKDVALAKVPNAEDKLKVEKLIDACLANKGNSP 368
+ S L D K ++ L + N E + KV K+ L + N P
Sbjct: 88 SNFVMSVLGQDDVRKSAVELTLFVLQNRETQAKVSKVAAQTLKDLINHP 136
>SB_24758| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-10)
Length = 367
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -2
Query: 158 LFISFRLG--ETVGSVFLQVLLLLICEGLSQDNADDEHDK 45
LF++F G E VG F+ L CE D DD+H++
Sbjct: 305 LFLAFNRGYRELVGRAFIYTCCTL-CEIAEDDENDDDHER 343
>SB_16848| Best HMM Match : Ion_trans_2 (HMM E-Value=0.083)
Length = 283
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +3
Query: 324 EKLIDACLANKGNSPHQTAWNYVKCYHEKDPKHALFL*THNPTQPFHTSLVLNSS 488
+K++D L ++ TA +YV+ YHE KH+L +H V++S+
Sbjct: 197 KKIVDGILIDR-----YTAGSYVRHYHENKLKHSLISASHVQISGQQIGFVISSN 246
>SB_24560| Best HMM Match : Ank (HMM E-Value=0)
Length = 248
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -2
Query: 113 LQVLLLLICEGLSQDNADDEHDKSLHDALCLGS 15
++V LL+ +G + D +D+ + LH A C+GS
Sbjct: 64 MEVGRLLVEKGAALDKKNDKGETPLHMAACIGS 96
>SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01)
Length = 590
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +3
Query: 255 KDGKFKKDVALAKVPNAEDKLKVEKLIDACLANKGNSPHQTAWNYVKCYHEKDPK 419
K+G+ +K+ K N E ++KVE+ CLA + P +TA ++ +PK
Sbjct: 152 KEGEMEKEYPSCKFANRESEVKVER---TCLA---SLPVRTATTTTMVQNQDEPK 200
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,394,753
Number of Sequences: 59808
Number of extensions: 396574
Number of successful extensions: 1123
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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