Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c10r
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    31   0.23 
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    26   4.9  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    25   8.6  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   8.6  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   8.6  

>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = +2

Query: 47  VATTIVLCTYLDNVYITFVSEIRKSFCTERYY 142
           + TT+    Y+ ++  +++S+IR+ +CT  +Y
Sbjct: 104 IGTTVGFAAYMLDIVTSWLSDIRRGYCTSHWY 135


>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 475 HASLSRKKYINLIMPVYESR 416
           + SLS  KYIN + P YE R
Sbjct: 457 NTSLSYSKYINALQPWYEER 476


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1028

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 475  HASLSRKKYINLIMPVYESRALHAYCVSVVIRIL 374
            HA L+R+K   + + +YE    ++Y V+  +R+L
Sbjct: 902  HAGLNRQKPDKIDLDLYEPLPENSYLVAAELRVL 935


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 317  PTRLVCFRKSASYQFLNH*NCFDII 243
            PT++ CF     Y ++   N FDI+
Sbjct: 1862 PTKIKCFLDKIGYSWMTEENDFDIV 1886


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 70  YLLRQCIHNVCIGNTKIIL 126
           YLL+QC+ N+ + N+ I L
Sbjct: 652 YLLKQCLSNISLSNSVISL 670


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,993,443
Number of Sequences: 5004
Number of extensions: 62908
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)