Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10c10f
(636 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328... 35 0.062
06_01_0172 + 1362101-1363708 31 0.58
04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931 31 0.77
01_06_0837 - 32328191-32328369,32328682-32328731,32328844-323289... 29 2.3
12_02_0259 + 16527788-16527842,16528014-16528381 28 5.4
11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395 28 7.1
04_04_1230 + 31929261-31929386,31929497-31929643,31929974-319300... 28 7.1
11_06_0708 + 26475306-26478404 27 9.4
11_06_0204 + 21191611-21192807 27 9.4
08_01_0999 + 10145782-10146392,10147665-10147734,10149409-101496... 27 9.4
02_03_0101 + 15233783-15234601 27 9.4
01_05_0623 - 23768426-23768794 27 9.4
>05_03_0604 -
16132173-16132391,16132488-16132556,16132824-16132898,
16132981-16133113,16133188-16133297,16133360-16133407,
16133657-16133983,16135006-16135233,16135360-16135689,
16135780-16136586
Length = 781
Score = 34.7 bits (76), Expect = 0.062
Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 11/128 (8%)
Frame = +1
Query: 121 QYQFFPVSSGSVQFKVRAANDAHIALTTGPQESDPMYEVMIGGWGNAKSVIRKNRTKPDK 300
+++F G + F+ A ND + L Q Y + + ++ +R K K
Sbjct: 22 EFRFRETGRGCITFEASAHND--VTLVFREQPGSQHYHYKMDNSRHYIVILGSHRNKRLK 79
Query: 301 VEIESP--------GILNGGEYRGFWVRWDSGIIS--AGREGEAIPFISWSDPEP-FPVY 447
+E++ G+ ++ +W+ G+IS GR W DP+P V
Sbjct: 80 IEVDGKTVVDVAGIGLCCSSSFQSYWISIYDGLISIGQGRHPNNNILFQWLDPDPNRNVQ 139
Query: 448 YVGVCTGW 471
YVG+ + W
Sbjct: 140 YVGL-SSW 146
>06_01_0172 + 1362101-1363708
Length = 535
Score = 31.5 bits (68), Expect = 0.58
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = +2
Query: 242 LEAGETLRASSGKIEPSPIRLKLKAPEFLTEGNIVVFGFVGIAALSPLDARVKLFHSY-- 415
L + LR ++ +P +L + P L NI++ G VGI LDA +K+
Sbjct: 167 LVSARRLRLAAALFRAAPTKLYI-TPN-LVSCNILLKGLVGIG---DLDAALKVLDEMPG 221
Query: 416 LGLIPNLSQFTTSESAQAGVPQAPGKSK 499
LG+ P++ +TT SA G G K
Sbjct: 222 LGITPDVVTYTTVLSAYCGKGDIEGAQK 249
>04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931
Length = 246
Score = 31.1 bits (67), Expect = 0.77
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +1
Query: 325 LNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEP 435
L G +R WV W +I AG G F+ PEP
Sbjct: 195 LVGWNWRHHWVYWLGPLIGAGMAGALYEFVMAEQPEP 231
>01_06_0837 -
32328191-32328369,32328682-32328731,32328844-32328923,
32329193-32329345,32329505-32329654,32329877-32330000,
32330086-32330198,32330287-32330420,32330566-32331232
Length = 549
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +1
Query: 313 SPGILNGGEYRGF---WVRWDSGIISAGREGEAIPFISWSDPEPFPVYY 450
SP +L GG Y G W+R I+ G + P + + D P ++Y
Sbjct: 211 SPVVLFGGSYGGMLAAWMRLKYPHIAVGALASSAPILQFEDVVPSTIFY 259
>12_02_0259 + 16527788-16527842,16528014-16528381
Length = 140
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = -1
Query: 411 EWNSFTLASSGDNAAIPTNPKTTIFPSVKNSGAFNFNLIGLGSIFPDDALSVS 253
E +S +A+ G +A+P PK +F + + L+G G P++ SV+
Sbjct: 68 EVSSVVVAAPGFRSAVPVEPK--LFRRIAGGEEKGYYLVGDGEAIPNNGSSVT 118
>11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395
Length = 794
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = -2
Query: 422 DQDMNGIASPSRPAEIMPLS-QR----TQKPRYSPPLRIP 318
D+ + SP+ PA P S QR Q PRY PPLR P
Sbjct: 324 DRAASPARSPASPARRGPQSPQRRVSPAQSPRYQPPLRKP 363
>04_04_1230 +
31929261-31929386,31929497-31929643,31929974-31930065,
31930159-31930255,31930533-31930576,31930708-31930796,
31931083-31931174,31931266-31931412,31931539-31931644,
31931736-31931812,31932281-31932352,31932738-31932865,
31932947-31933142,31933206-31933407,31933642-31933691
Length = 554
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 318 GAFNFNLIGLGSIFPDDALSVSPASNHHLIHRIRFLRAC 202
G++NF+L L + D A + PAS+ L+ +R R C
Sbjct: 11 GSYNFHLRSLSAASRDSAAAADPASDPILLESVR--RVC 47
>11_06_0708 + 26475306-26478404
Length = 1032
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = -3
Query: 634 EVLDLLKHQPIYRLLQTEGVRFLRSLQGSQGGLRTMQLLQVQSVALRFSRSLWHPSLCRL 455
E+ D + + RLL G + L S G L+ +Q+L +Q +S LC L
Sbjct: 580 EIPDCVGYLIHLRLLDLSGTN-ISCLPKSIGALKNLQMLHLQRCESLYSLPSMITRLCNL 638
Query: 454 RR 449
RR
Sbjct: 639 RR 640
>11_06_0204 + 21191611-21192807
Length = 398
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 217 SDPMYEVMIGGWGNAKSVIRKNRTKPDKVEIESPGILNG 333
S +Y G WG+A ++ R++ D V++ PG+ G
Sbjct: 195 SAAIYSSETGAWGDAIALEREHPDPDDAVKVGKPGVQVG 233
>08_01_0999 +
10145782-10146392,10147665-10147734,10149409-10149643,
10149726-10149799,10149881-10149955
Length = 354
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/42 (40%), Positives = 17/42 (40%)
Frame = +2
Query: 476 PQAPGKSKCHRLHL*QLHCTQPPLATLEATEETYPLRLEEPV 601
P AP S H LHL LH PLA L LR V
Sbjct: 41 PAAPSSSSSH-LHLLPLHDPSSPLAALPLPSRAASLRCSPSV 81
>02_03_0101 + 15233783-15234601
Length = 272
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 317 PEFLTEGNIVVFGFVGIAALSPLDARVKLFHSYLGLIP 430
PE T+G V+ + + + P+ RV+LF Y+ + P
Sbjct: 222 PEHTTDGMPVILESMALVSTPPVAKRVRLFGVYIDVPP 259
>01_05_0623 - 23768426-23768794
Length = 122
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 184 AHIALTTGPQESDPMYEVMIGGWGNAKSVIRKNRTKP 294
A + T + S P + + GWGN S + + RT P
Sbjct: 32 AELGDDTSTKRSSPAWGGELVGWGNMSSPVWERRTSP 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,806,044
Number of Sequences: 37544
Number of extensions: 367516
Number of successful extensions: 1085
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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