Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c10f
         (636 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27124| Best HMM Match : NHL (HMM E-Value=6.4e-17)                   31   0.78 
SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2)                 30   1.8  
SB_7118| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.4  
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_27051| Best HMM Match : DUF827 (HMM E-Value=1.8)                    29   4.2  
SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7)           28   5.5  
SB_933| Best HMM Match : ExoD (HMM E-Value=6)                          28   7.3  
SB_45939| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00051)         27   9.7  
SB_2980| Best HMM Match : DUF814 (HMM E-Value=2.10195e-44)             27   9.7  
SB_36923| Best HMM Match : FlaC_arch (HMM E-Value=0.34)                27   9.7  
SB_20027| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_1743| Best HMM Match : DUF563 (HMM E-Value=3.7)                     27   9.7  

>SB_27124| Best HMM Match : NHL (HMM E-Value=6.4e-17)
          Length = 415

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 288 GSIFPDDALSVSPASNHHL-IHRIRFLRACRERDVGIIRCSDFEL 157
           GSIF D    VS   NH L + R + L  C+ER++G     D EL
Sbjct: 303 GSIFHDKTFIVSDLRNHVLRVFRQKGLTICKERNIGQRGGKDGEL 347


>SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2)
          Length = 878

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +1

Query: 211 QESDPMYEVMIGGWGNAKSVIRKN-RTKPDKVEIESPGILNGG 336
           Q+ D MYEV+I       + +RK+ R+  D  E E PGI+ GG
Sbjct: 766 QQQDQMYEVLI------HNALRKSFRSDEDDDENEEPGIIRGG 802


>SB_7118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +1

Query: 205 GPQESDPMYEVMIGGWGNAKSVIRKNRT-KPDKVEIESPGILNGGEY 342
           GP +   +    +G W    S  R  +T  P KV +  PGI NG  Y
Sbjct: 84  GPTQDCDVNSGEVGPWKEVPSCSRVGQTGDPSKVRVYGPGIENGLRY 130


>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3142

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = +2

Query: 356  FVGIAALSPLDARVKLFHSYLGLIPNLSQFTTSESAQAGVPQAPGKSKCHRLHL*QLHCT 535
            F    +LSP  +    FHS +    + S  + ++ ++     +   S+   +H+   H T
Sbjct: 2865 FHSFTSLSPKPSPKSSFHSCIDSSTDSSYHSVTQKSRLPSTTSSNSSRTSSIHVPSFHST 2924

Query: 536  QPPLA--TLEATEETY 577
            QP  A  TL +T  ++
Sbjct: 2925 QPANAPFTLPSTSRSF 2940


>SB_27051| Best HMM Match : DUF827 (HMM E-Value=1.8)
          Length = 283

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
 Frame = +1

Query: 145 SGSVQFKVRAANDAHIALTTGPQESDPMYEVMI-------GGWGNAKSVIRKNRTKPDKV 303
           SGSV + V  A  +H  L    + + P+Y + +          G    V+R    +P+K 
Sbjct: 84  SGSVNYFVAPAESSHSQLVLIEELNQPIYSLTLKIIICLSETTGTLPLVLRNALPRPEKY 143

Query: 304 EIESPGILNG 333
              SPG L G
Sbjct: 144 PENSPGTLTG 153


>SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7)
          Length = 225

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 301 VEIESPGILNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEPFPV-YYV 453
           + I + GI +  +   FWV + S  +  G     I    W+DP+P  V YY+
Sbjct: 1   LNIATSGITSAEKRMVFWVDFRSANLVLGSGATVIA--QWTDPDPLEVGYYI 50


>SB_933| Best HMM Match : ExoD (HMM E-Value=6)
          Length = 555

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 293 PIRLKLKAPEFLTEGNIVVFGFVG-IAALSPLDARVKLFHSYLG 421
           P  ++ K P  L +G I+  GF+G ++AL      ++LF    G
Sbjct: 100 PYVIRPKGPRLLRQGTIMKAGFIGLVSALGVYACNLELFRRCAG 143


>SB_45939| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00051)
          Length = 575

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 20/67 (29%), Positives = 34/67 (50%)
 Frame = +1

Query: 232 EVMIGGWGNAKSVIRKNRTKPDKVEIESPGILNGGEYRGFWVRWDSGIISAGREGEAIPF 411
           +  + G  +AKS+   +  +P+K +IES   LN    +       + +I AG + +A P 
Sbjct: 247 QCQLAGTRSAKSIYFGSYYRPNKSDIESLDELNSSLLKMGTTLHKNNVILAG-DFDA-PD 304

Query: 412 ISWSDPE 432
           I W +PE
Sbjct: 305 IDWVNPE 311


>SB_2980| Best HMM Match : DUF814 (HMM E-Value=2.10195e-44)
          Length = 950

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 253 GNAKSVIRKNRTKPDKVEIESPGILNGGEYRGFWVR 360
           GNA  VI      P+ +E E PG L   + R  W R
Sbjct: 784 GNAADVIDGAGAPPEGLEQEEPGPLRTAQSREAWTR 819


>SB_36923| Best HMM Match : FlaC_arch (HMM E-Value=0.34)
          Length = 240

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 364 DSGIISAGREGEAIPFISWSDPEPFPVYYVGVCTG 468
           D G +  G E   I F+ WS  + F      VCTG
Sbjct: 200 DKGNVKMGNELSDISFVLWSVEQEFASNAGAVCTG 234


>SB_20027| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 471 PACA-DSDVVNWERFGIRPRYEWNSFTLASSGDNAAIPTNPKTT 343
           P C  ++  V  +    RP+ EW S ++ +  D +A+P   KTT
Sbjct: 84  PTCTGNTPEVKCKTIVARPKREWASGSVPNEKDESALPDAIKTT 127


>SB_1743| Best HMM Match : DUF563 (HMM E-Value=3.7)
          Length = 249

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 285 SIFPDDALSVSPASNHHLIHRIRFLRAC 202
           S+ P+ A+S++  S HH   R  FLR C
Sbjct: 154 SLHPEVAMSLATYSLHHFTQRRFFLRRC 181


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,756,728
Number of Sequences: 59808
Number of extensions: 396998
Number of successful extensions: 1127
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)