Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c10f
         (636 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    24   4.6  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    24   4.6  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    24   4.6  
AJ010299-1|CAA09070.1|  722|Anopheles gambiae stat protein.            23   6.1  
CR954256-5|CAJ14146.1|  615|Anopheles gambiae predicted protein ...    23   8.1  

>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 314 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 222
           LSIS L  L +FFL+ +   P   ++   +G
Sbjct: 277 LSISILISLHVFFLLVVEIIPPTSLVVPLLG 307


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 314 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 222
           LSIS L  L +FFL+ +   P   ++   +G
Sbjct: 277 LSISILISLHVFFLLVVEIIPPTSLVVPLLG 307


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 314 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 222
           LSIS L  L +FFL+     P   ++   +G
Sbjct: 273 LSISILLSLTVFFLLLAEIIPPTSLVVPLLG 303


>AJ010299-1|CAA09070.1|  722|Anopheles gambiae stat protein.
          Length = 722

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 15/59 (25%), Positives = 24/59 (40%)
 Frame = +1

Query: 76  TIMANVMDVATDDNLQYQFFPVSSGSVQFKVRAANDAHIALTTGPQESDPMYEVMIGGW 252
           T  A V    TD+N+QY +       + F V  +ND  I+     +++ P        W
Sbjct: 473 TFSARVGRGLTDENMQYMYRKAYRDKLSFSV--SNDQMISFAQFCKDTTPECNYTFWEW 529


>CR954256-5|CAJ14146.1|  615|Anopheles gambiae predicted protein
           protein.
          Length = 615

 Score = 23.0 bits (47), Expect = 8.1
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +2

Query: 539 PPLATLEATEETYPLRLEEPVYGLMFQE 622
           PP+A++EA + T+  ++  P Y  + Q+
Sbjct: 314 PPVASVEAVKFTHIFQILPPSYDRLCQQ 341


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 622,012
Number of Sequences: 2352
Number of extensions: 13252
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 62305095
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)