Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c10f
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024843-9|AAF60836.1|  263|Caenorhabditis elegans Hypothetical ...    31   0.52 
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z68215-2|CAA92451.2|  452|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AF016427-10|AAB65348.1|  301|Caenorhabditis elegans Hypothetical...    28   4.9  
U58753-5|AAC24434.2|  348|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AC024785-5|AAF60596.1|  577|Caenorhabditis elegans C-type lectin...    27   8.5  

>AC024843-9|AAF60836.1|  263|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.9 protein.
          Length = 263

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -2

Query: 401 ASPSRPAEIMPLSQRTQKPRYSPPLRIPGLSISTLSGLVLFFLMTLLAFPQPP 243
           A+PS P  I     +T+KP  S P +I   S +  +  +  F  TL + P  P
Sbjct: 186 ANPSLPVHIQTFRVKTRKPVLSRPTKIRFSSEADRNSFIFSFSKTLRSLPDRP 238


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
           protein F21E9.1 protein.
          Length = 1170

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/63 (28%), Positives = 35/63 (55%)
 Frame = -1

Query: 405 NSFTLASSGDNAAIPTNPKTTIFPSVKNSGAFNFNLIGLGSIFPDDALSVSPASNHHLIH 226
           +S  L+S   N +  + P+T+    +  S +F+F+L       P  +L +SP  ++H+IH
Sbjct: 261 SSLLLSSINSNLSHNSIPQTSP-KRISQSSSFSFSL-------PPSSLPLSPKIDNHVIH 312

Query: 225 RIR 217
           +I+
Sbjct: 313 KIK 315


>Z68215-2|CAA92451.2|  452|Caenorhabditis elegans Hypothetical
           protein C53B4.2 protein.
          Length = 452

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 365 IAALSPLDARVKLFHSYLGLIPNLSQFTTSE 457
           I A SPLD + K+F   +   P LS++TT E
Sbjct: 189 IKATSPLDDKSKMFMDRIVKKPYLSKYTTKE 219


>AF016427-10|AAB65348.1|  301|Caenorhabditis elegans Hypothetical
           protein F32D1.7 protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 440 GKGSGSDQDMNGIASPSRPAEIMPLSQRTQKPRYSP 333
           G GSGS  D +G + P+R +  +P +     PR  P
Sbjct: 159 GSGSGSGNDSSGSSGPTRMSGQVPSTSGPPPPRPPP 194


>U58753-5|AAC24434.2|  348|Caenorhabditis elegans Hypothetical
           protein W03B1.6 protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -2

Query: 143 ETGKNWY*RLSSVATSMTLAMIVV 72
           ET + WY +LSS +T+M +A++ V
Sbjct: 15  ETFEKWYLKLSSTSTAMLIAILFV 38


>AC024785-5|AAF60596.1|  577|Caenorhabditis elegans C-type lectin
           protein 73 protein.
          Length = 577

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 217 SDPMYEVMIGGWGNAKSVIRKNRTK 291
           S+P YEV++GG   A  V+ +N+ K
Sbjct: 334 SNPHYEVVLGGKKTANFVVEENKIK 358


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,639,609
Number of Sequences: 27780
Number of extensions: 291391
Number of successful extensions: 832
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)