Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c09f
         (341 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    28   0.35 
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    27   0.60 
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    27   0.80 
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   1.4  
SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|c...    26   1.8  
SPBC29A3.21 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   2.4  
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    25   3.2  
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S...    24   7.5  
SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         23   9.8  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    23   9.8  

>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 28.3 bits (60), Expect = 0.35
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = -2

Query: 274 KVHTGVSLLSSSLHDWCMTASCAQKYRVH 188
           K + G+++  +   +W + + C++KYR H
Sbjct: 155 KTNKGIAIPDAETFEWLVCSECSEKYRDH 183


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1317

 Score = 27.5 bits (58), Expect = 0.60
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +3

Query: 159  DSVTYSKEAECTRYFCAHDAVIHQSCKDELSSDTPVCTFTKPEENTHII 305
            ++VTYS    C R   + +  ++Q C   +    P   F KP E   ++
Sbjct: 1038 EAVTYSAIIYCLRVLISENIPLNQGCLLPIKVIIPDNCFLKPSETAAVV 1086


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1260

 Score = 27.1 bits (57), Expect = 0.80
 Identities = 11/48 (22%), Positives = 19/48 (39%)
 Frame = +3

Query: 162  SVTYSKEAECTRYFCAHDAVIHQSCKDELSSDTPVCTFTKPEENTHII 305
            ++TYS    C R     D  +++ C   +    P   F  P E   ++
Sbjct: 1021 AITYSSVIYCLRSIINQDIPLNEGCLKPIEIRIPPSCFLNPSETAAVV 1068


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 167  NILEGSRMHPILLRARCCHTP 229
            N  EG   HP+LLR    HTP
Sbjct: 2072 NASEGLLKHPLLLRNNLIHTP 2092


>SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 337 FFQEGFI*RTQIM*VFSSGFVKVHT 263
           FFQEG +   ++   FS G V +HT
Sbjct: 165 FFQEGDLLVAEVQQYFSDGSVSIHT 189


>SPBC29A3.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 100

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = -1

Query: 329 RRLYLKNADYVSIFFWLCKGTHRGVAAQLIFTRLVYDSI---VRAEVSGAFCFL 177
           ++ Y  + DY   F +     H  V   +IFT  ++ S+   +R  ++   CFL
Sbjct: 47  QKSYSASIDYCQRFLFSSNLKHNYVNLNIIFTSCIFRSLREFLRFYIAAIMCFL 100


>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 263 CVYLYKARRKYSHNLRSLNKAF 328
           C+Y+Y A  KY  N + + K +
Sbjct: 462 CIYVYSAYEKYRQNKKKVFKGY 483


>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = -2

Query: 250 LSSSLHDWCMTASCAQ--KYRVHSASFEYVTESKGRTPSNSLM*QP*RPLNLS 98
           L+S+L++  +  S     K + +S+S    +ES+G+T SN+    P +  NLS
Sbjct: 41  LNSNLNEKSVEESSKNETKEQFNSSSIPRESESEGKTASNTSPLSPKKVENLS 93


>SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 75

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 253 LLSSSLHDWCMTASCAQKYRVHS 185
           +  SSL D+C+ A   Q+Y   S
Sbjct: 9   IYGSSLADYCLNAKYGQRYATFS 31


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -2

Query: 241 SLHDWCMTASCAQKYRVHSASFEYVTES 158
           S   WC+ A+C    R HS + + +  +
Sbjct: 430 SPESWCILANCFSLQREHSQALKCINRA 457


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,407,031
Number of Sequences: 5004
Number of extensions: 27426
Number of successful extensions: 75
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)