Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c09f
         (341 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16065| Best HMM Match : zf-C3HC4 (HMM E-Value=0.91)                 29   0.99 
SB_48125| Best HMM Match : RVT_1 (HMM E-Value=8.4e-38)                 29   1.3  
SB_45005| Best HMM Match : RVT_1 (HMM E-Value=6.6e-32)                 29   1.3  
SB_25377| Best HMM Match : Phospholip_A2_2 (HMM E-Value=1.6)           29   1.3  
SB_6809| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   1.7  
SB_8185| Best HMM Match : Rho_N (HMM E-Value=0.0007)                   27   4.0  
SB_41690| Best HMM Match : DSL (HMM E-Value=0)                         27   5.3  
SB_28533| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0065)            27   5.3  
SB_10256| Best HMM Match : RasGEF (HMM E-Value=1.8e-34)                27   5.3  
SB_11594| Best HMM Match : F5_F8_type_C (HMM E-Value=4.4e-35)          27   5.3  
SB_45996| Best HMM Match : VWA (HMM E-Value=2.6e-12)                   26   7.0  
SB_39703| Best HMM Match : PHD (HMM E-Value=9.3e-12)                   26   7.0  
SB_25624| Best HMM Match : PHD (HMM E-Value=1.3e-17)                   26   7.0  
SB_20294| Best HMM Match : Orthopox_F6 (HMM E-Value=8.1)               26   7.0  
SB_46020| Best HMM Match : PHD (HMM E-Value=9.3e-12)                   26   7.0  
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.0  
SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  
SB_37722| Best HMM Match : Hydrophobin (HMM E-Value=0.83)              26   9.2  
SB_19820| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  
SB_27528| Best HMM Match : Epimerase (HMM E-Value=3.2e-06)             26   9.2  

>SB_16065| Best HMM Match : zf-C3HC4 (HMM E-Value=0.91)
          Length = 399

 Score = 29.1 bits (62), Expect = 0.99
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 204 CAHDAVIHQSCKDELSSDTPVCTFTKPEENTHIICVL 314
           C +D+    SC+      T + T +  E N HIICVL
Sbjct: 13  CPNDSCYTVSCQGNEDISTMLRTLSLKELNPHIICVL 49


>SB_48125| Best HMM Match : RVT_1 (HMM E-Value=8.4e-38)
          Length = 453

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 24/93 (25%), Positives = 39/93 (41%)
 Frame = -2

Query: 292 FSSGFVKVHTGVSLLSSSLHDWCMTASCAQKYRVHSASFEYVTESKGRTPSNSLM*QP*R 113
           F SGF  +H+ V+ L  +  DW        K  V++  F  + ++        L+     
Sbjct: 116 FQSGFRSLHSTVTALLKATDDWAFN---IDKGNVNAVVFLDLKKAFDTVDHGILL----S 168

Query: 112 PLNLSGIGSKAERWIAAEAKVTQTQKTSVFNDM 14
            LN  GI   A  W  +   + +TQ+ SV N +
Sbjct: 169 KLNFYGISGIAHEWFKSYL-LNRTQRCSVNNSL 200


>SB_45005| Best HMM Match : RVT_1 (HMM E-Value=6.6e-32)
          Length = 871

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 24/93 (25%), Positives = 39/93 (41%)
 Frame = -2

Query: 292 FSSGFVKVHTGVSLLSSSLHDWCMTASCAQKYRVHSASFEYVTESKGRTPSNSLM*QP*R 113
           F SGF  +H+ V+ L  +  DW        K  V++  F  + ++        L+     
Sbjct: 475 FQSGFRSLHSTVTALLKATDDWAFN---IDKGNVNAVVFLDLKKAFDTVDHGILL----S 527

Query: 112 PLNLSGIGSKAERWIAAEAKVTQTQKTSVFNDM 14
            LN  GI   A  W  +   + +TQ+ SV N +
Sbjct: 528 KLNFYGISGIAHEWFKSYL-LNRTQRCSVNNSL 559


>SB_25377| Best HMM Match : Phospholip_A2_2 (HMM E-Value=1.6)
          Length = 129

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 209 RAEVSGAFCFLRVCYRIKGKDTIELPDVTALKAIKFIRDW 90
           RA + G  C++ VC+ ++  +  ELP    L+++     W
Sbjct: 50  RAYILGDVCYVVVCFSVESCEVAELPFNDGLRSVVVYMAW 89


>SB_6809| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +3

Query: 87  EPIPDKFNGLQGCYIREFDGVLPFDSVTYSKEAECTRYFC 206
           E +P   N L   Y R+F   LP + V        TRY C
Sbjct: 109 EIVPSPENDLMVAYARQFSCYLPLNQVIPRGRRTTTRYVC 148


>SB_8185| Best HMM Match : Rho_N (HMM E-Value=0.0007)
          Length = 1133

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +3

Query: 6    VTNMSLKTLVFCVCVTLASAAIQRSALEPIPDKFNGLQGCYIREFDGVLPFDSVTY 173
            +T + L+ L  C  + +    I R  +  I  +       Y+RE+D  LP   +TY
Sbjct: 847  ITRVELELLTDCDMLLMFEEGI-RGGVSMISTRHGEANNPYMREYDPNLPIKYITY 901


>SB_41690| Best HMM Match : DSL (HMM E-Value=0)
          Length = 2798

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +3

Query: 168  TYSKEAECTRYFCAHDAVIHQSCKDELSSDTPVCTFTKPEENT--HIIC 308
            TY K +  + Y+C HD+   + C D+   +     + KP  N+  H IC
Sbjct: 1893 TYCKSSNGSYYYCKHDSG-KRVCLDDWHGER-CNVYCKPRNNSEGHYIC 1939


>SB_28533| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0065)
          Length = 681

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +3

Query: 6   VTNMSLKTLVFCVCVTLASAAIQRSALEPIPDKFNGLQGCYIREFDGVLPFDSVTY 173
           +T + L+ L  C  + +    I R  +  I  + +     Y+RE+D  LP   +TY
Sbjct: 371 ITRVELELLTDCDMLLMFEEGI-RGGVSMISTRHSKANNPYMREYDPNLPTKYITY 425


>SB_10256| Best HMM Match : RasGEF (HMM E-Value=1.8e-34)
          Length = 792

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +3

Query: 6   VTNMSLKTLVFCVCVTLASAAIQRSALEPIPDKFNGLQGCYIREFDGVLPFDSVTY 173
           +T + L+ L  C  + +    I R  +  I  + +     Y+RE+D  LP   +TY
Sbjct: 425 ITRVELELLTDCDMLLMFEEGI-RGGVSMISTRHSKANNPYMREYDPNLPTKYITY 479


>SB_11594| Best HMM Match : F5_F8_type_C (HMM E-Value=4.4e-35)
          Length = 1814

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 87   EPIPDK--FNGLQGCYIREFDGVLPFDSVTYSKEAECT 194
            E IP +  F GL+G     FDG + FD+++ + +  CT
Sbjct: 1521 EDIPFRVIFEGLEG---GRFDGEIAFDNISLTSDNNCT 1555


>SB_45996| Best HMM Match : VWA (HMM E-Value=2.6e-12)
          Length = 595

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 254 RHPCVYLYKARRKYSHNLRSLNKAFLKKK 340
           +H C Y  +A + Y H+++SL+  F  K+
Sbjct: 546 KHGCKYEEQAIKSYEHHMKSLHTNFQIKR 574


>SB_39703| Best HMM Match : PHD (HMM E-Value=9.3e-12)
          Length = 886

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 254 RHPCVYLYKARRKYSHNLRSLNKAFLKKK 340
           +H C Y  +A + Y H+++SL+  F  K+
Sbjct: 243 KHGCKYEEQAIKSYEHHMKSLHTNFQIKR 271


>SB_25624| Best HMM Match : PHD (HMM E-Value=1.3e-17)
          Length = 1828

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 254 RHPCVYLYKARRKYSHNLRSLNKAFLKKK 340
           +H C Y  +A + Y H+++SL+  F  K+
Sbjct: 674 KHGCKYEEQAIKSYEHHMKSLHTNFQIKR 702



 Score = 26.2 bits (55), Expect = 7.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 254  RHPCVYLYKARRKYSHNLRSLNKAFLKKK 340
            +H C Y  +A + Y H+++SL+  F  K+
Sbjct: 1408 KHGCKYEEQAIKSYEHHMKSLHTNFQIKR 1436


>SB_20294| Best HMM Match : Orthopox_F6 (HMM E-Value=8.1)
          Length = 242

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 254 RHPCVYLYKARRKYSHNLRSLNKAFLKKK 340
           +H C Y  +A + Y H+++SL+  F  K+
Sbjct: 173 KHGCKYEEQAIKSYEHHMKSLHTNFQIKR 201


>SB_46020| Best HMM Match : PHD (HMM E-Value=9.3e-12)
          Length = 824

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 254 RHPCVYLYKARRKYSHNLRSLNKAFLKKK 340
           +H C Y  +A + Y H+++SL+  F  K+
Sbjct: 284 KHGCKYEEQAIKSYEHHMKSLHTNFQIKR 312


>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 197 SGAFCFLRVCYRIKGKDTIELPDVTALKAIKFIRDW 90
           S  F F+R   +   +D ++  D T L A KF+  W
Sbjct: 56  SRGFAFVRFYEKRDAEDAMDCMDATCLMAEKFVFRW 91


>SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 39  CVCVTLASAAIQRSALEPIPDKFNGLQGCYIREF 140
           C C+ L S  I      P P+++  L+  Y+ EF
Sbjct: 450 CRCIELGSYEIDTWYSSPYPEEYQRLKKIYLCEF 483


>SB_37722| Best HMM Match : Hydrophobin (HMM E-Value=0.83)
          Length = 123

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 21 LKTLVFCVCVTLASAAIQRSALEPIP 98
          L  L  CVCVT A+ A  +   +P P
Sbjct: 7  LVILAVCVCVTFAATATVKPTKKPTP 32


>SB_19820| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 395

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 75  RSALEPIPDKFNGLQGCYIREFDGVLPFDSVTYSKEAECTRYFCAHDA 218
           + ALE +   FN L+   +R+  G  P D  ++    EC      H+A
Sbjct: 302 KPALEVLIKSFNDLE---VRDDRGRTPLDLASFQGHVECVECLLNHNA 346


>SB_27528| Best HMM Match : Epimerase (HMM E-Value=3.2e-06)
          Length = 441

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +3

Query: 156 FDSVTYSKEAECTRYFCAHDAVIHQSCKDELSS 254
           FDS    K    T Y C  D  +H  C + L+S
Sbjct: 62  FDSKERIKPYTSTHYRCDRDKALHLECPELLTS 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,756,529
Number of Sequences: 59808
Number of extensions: 218839
Number of successful extensions: 571
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 498218920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)