Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c09f
         (341 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53090.1 68418.m06595 oxidoreductase, putative similar to for...    32   0.12 
At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to R...    27   2.5  
At4g29905.1 68417.m04255 expressed protein                             26   5.7  
At1g04650.1 68414.m00462 hypothetical protein                          26   5.7  
At2g14630.1 68415.m01645 hypothetical protein contains Pfam prof...    26   7.6  
At4g19660.1 68417.m02888 ankyrin repeat family protein / BTB/POZ...    25   10.0 
At2g23700.1 68415.m02830 expressed protein contains Pfam profile...    25   10.0 
At1g79540.1 68414.m09272 pentatricopeptide (PPR) repeat-containi...    25   10.0 

>At5g53090.1 68418.m06595 oxidoreductase, putative similar to
           forever young oxidoreductase (FEY3) GI:12004621 from
           [Arabidopsis thaliana]
          Length = 364

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
 Frame = +3

Query: 126 YIREFDGVLPFDSVTYSKEAECTRYFCAHDAVIHQSCKDELSSDTPVCTF-------TKP 284
           Y++    ++P+  +   +E   +  F A DA I + C+   + D PVCTF       TKP
Sbjct: 260 YVQVQYALIPY-FIFSPQEGSRSTLFSATDAQIPEHCEKLKTEDKPVCTFISQNCKHTKP 318

Query: 285 EENTH 299
            E  H
Sbjct: 319 SEEAH 323


>At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to RNA
           helicase SDE3 [Arabidopsis thaliana] GI:13811296
          Length = 1002

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 96  PDKFNGLQGCYIREFDGVLPFDSVTYSKEAECTRYFCAHDAV 221
           P  F G+QGC  RE +    F+ +  SK  E  +   A+D V
Sbjct: 663 PMVFYGIQGCDEREGNNPSWFNRIEISKVIETIKRLTANDCV 704


>At4g29905.1 68417.m04255 expressed protein
          Length = 67

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 218 SIVRAEVSGAFCFLRVCYRIKGK 150
           S V  E    FCFL +C+++K K
Sbjct: 31  SAVDIETKWLFCFLPLCFKVKRK 53


>At1g04650.1 68414.m00462 hypothetical protein
          Length = 936

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 129 IREFDGVLPFDSVTYSKEA-ECTRYFCAHDAVIHQSCKDELSSDTPVCTFTKPEENTHI 302
           I+  D +LP  S   + +  +C+ YF A    + Q C   L+        ++ EE+++I
Sbjct: 12  IKSSDAILPVASKYLALDRPDCSHYFLAFAIKVSQWCAKHLNMSVMSMEESQEEEHSNI 70


>At2g14630.1 68415.m01645 hypothetical protein contains Pfam profile
           PF03004: Plant transposase (Ptta/En/Spm family)
          Length = 133

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
 Frame = +3

Query: 48  VTLASAAIQRSALEPIPDKFNGLQGC--YIREFDGVLP--FDSVTYSKEAECTRYFCAHD 215
           V L   A   + L+   +K N       Y+ E D V    +   +    A+ TR+   + 
Sbjct: 43  VLLEKLAAAEACLQLQAEKINSFDAYFEYLAEKDPVFACMYRRPSEPANADATRHAEGNQ 102

Query: 216 AVIHQSCKDELSSDTPVCTFTKPEENT 296
               Q+C D+  ++T   T T P+ +T
Sbjct: 103 TGDDQTCTDQTGTETETRTGTIPDSST 129


>At4g19660.1 68417.m02888 ankyrin repeat family protein / BTB/POZ
           domain-containing protein contains Pfam domain, PF00023:
           Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
          Length = 601

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 153 PFDSVTYSKEAECTRYFCAHDAVIHQSCKDEL-SSDTPVCTFTKPEE 290
           P D  T +   E ++Y    D +  +  ++ L S DTP C+ + PE+
Sbjct: 362 PKDYHTKTSRKEPSKYRLCIDILEREIRRNPLVSGDTPTCSHSMPED 408


>At2g23700.1 68415.m02830 expressed protein contains Pfam profile
           PF04784: Protein of unknown function, DUF547
          Length = 707

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/56 (21%), Positives = 26/56 (46%)
 Frame = -1

Query: 293 IFFWLCKGTHRGVAAQLIFTRLVYDSIVRAEVSGAFCFLRVCYRIKGKDTIELPDV 126
           ++F LC G H   A ++   + +Y  +  A+      ++R  + +K    + LP +
Sbjct: 593 LYFALCSGNHSDPAIRVFTPKGIYQELETAKEE----YIRATFGVKKDQKLVLPKI 644


>At1g79540.1 68414.m09272 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 780

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -3

Query: 294 YFLLAL*RYTQ--GCRCSAHLYTIGV 223
           +F+LA   Y +   C CS +LYT G+
Sbjct: 178 FFMLAFAVYNEMLKCNCSPNLYTFGI 203


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,366,931
Number of Sequences: 28952
Number of extensions: 145833
Number of successful extensions: 361
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 409426656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)