Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c08r
         (733 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    27   0.21 
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    27   0.21 
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    24   1.1  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +3

Query: 570 TDNTLLTCSNLYFLYRSPHGVGLFK*TPDGLFPKYVRTASFKLSSXILNL 719
           T N L T S+   LY +   V  F  +   +FP Y+RT S      I+ L
Sbjct: 33  TSNYLYTPSSTIDLYNTS-SVSNFNESSSSVFPNYIRTTSMVFCIIIMCL 81


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +3

Query: 570 TDNTLLTCSNLYFLYRSPHGVGLFK*TPDGLFPKYVRTASFKLSSXILNL 719
           T N L T S+   LY +   V  F  +   +FP Y+RT S      I+ L
Sbjct: 33  TSNYLYTPSSTIDLYNTS-SVSNFNESSSSVFPNYIRTTSMVFCIIIMCL 81


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 297 IDSVTXSLLPQVDVYEKPVLPLTLVNITFIS 389
           ID +  +   +V VY+ PVL L L   T++S
Sbjct: 114 IDKIFKTRDDRVKVYQAPVLQLFLYIFTYLS 144


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,993
Number of Sequences: 336
Number of extensions: 3113
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19571740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)