Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c08r
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    29   0.90 
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    27   3.6  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      26   6.4  
SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomy...    25   8.4  

>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 165 TTFPLSDIAYTTSTSKTPVYADKTAVIA*PGCNSASIPXLAP 290
           TT P+ D+AY+   +   + +D+TAV      +S+ I  L P
Sbjct: 94  TTLPIRDVAYSVDGNWIAIASDETAVKVVSSTDSSQIFSLRP 135


>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1466

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/62 (25%), Positives = 33/62 (53%)
 Frame = -1

Query: 661  SPSGVYLKSPTPWGDLYKKYKFEQVSRVLSVKSARLKSITKNPAIITTQDFENASNKTIK 482
            SP+ V +K     G  +++Y+F + S+V+   S +   +     ++TT D ENA   ++ 
Sbjct: 1147 SPTNV-IKYSADEGRTWQEYQFSEKSKVVVDVSTKPSGVGHQVLLLTTDD-ENAPISSVL 1204

Query: 481  VN 476
            ++
Sbjct: 1205 ID 1206


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +3

Query: 504 FSKSCVVIIAGFLVMDLSRADLTDNTLLTCSNLYFLYRS 620
           F ++ V +I+GFL+ +  +++  D+      +  +LY S
Sbjct: 344 FQENVVSLISGFLLKEYEKSNFLDSKFYVLIDFLYLYLS 382


>SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 215

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 602 VLLVQIAPWRWTFQVDSGRTLPEIRS 679
           VL V +   RW F+VD G  + E R+
Sbjct: 12  VLTVTVLTLRWMFRVDKGGEVSESRT 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,738,243
Number of Sequences: 5004
Number of extensions: 52459
Number of successful extensions: 156
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)