Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c08r
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0932 + 7197418-7198893                                           31   1.2  
03_05_1078 + 30205876-30206346,30206624-30207001,30207967-302080...    31   1.2  
11_04_0199 - 14760005-14760265,14760361-14760594                       30   2.2  
01_06_0430 + 29299970-29300031,29300162-29300294,29301057-293011...    30   2.2  
08_02_1142 + 24657642-24657878                                         29   2.9  
03_01_0643 - 4708245-4708355,4708456-4708800,4709124-4709700,470...    29   5.0  
09_06_0070 - 20670387-20670473,20672418-20672645,20673388-206735...    28   8.8  

>06_01_0932 + 7197418-7198893
          Length = 491

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -3

Query: 236 RFIGIHRGLGSGGRVRYVAEGECGGELQEVPQRT 135
           RF G+ R  G+G  +R VAEG  GG  ++V  RT
Sbjct: 383 RFGGLARAAGAGEVLRRVAEGPGGGVRRDVAWRT 416


>03_05_1078 +
           30205876-30206346,30206624-30207001,30207967-30208092,
           30209569-30209805
          Length = 403

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -3

Query: 272 GSGVTAGSGDHSRFIGIHRGLGSGGRVRYVAEGECGGELQEVPQR 138
           G+  T G+  H R + +   +G GG      EGE   E +EVPQR
Sbjct: 69  GAVTTGGTNIHRRVMDVLGRMGGGGGGGEKGEGEEMEEEEEVPQR 113


>11_04_0199 - 14760005-14760265,14760361-14760594
          Length = 164

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -3

Query: 275 YGSGVTAGSGDHSRF-IGIHRGLGSGGRVRYVAEG-ECGGEL 156
           YG G TA  G H    +G H G G+GG+ +   E  + GG L
Sbjct: 27  YGGGATAPGGGHGAMGMGGHAGAGAGGQFQPAREDHKTGGIL 68


>01_06_0430 + 29299970-29300031,29300162-29300294,29301057-29301160,
            29302201-29302372,29302488-29302628,29302707-29303055,
            29303133-29305477
          Length = 1101

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = -2

Query: 327  GARAKXSLNQSQSAPALVWKRSYSRVRRSQPFYRHTPGSWKWRSCT 190
            G R K S  QS +AP+ V  +S   V  SQ  Y   PG+   R  T
Sbjct: 893  GDRGKLS-EQSYNAPSSVMNKSSGGVNSSQDLYHEKPGAGARRGTT 937


>08_02_1142 + 24657642-24657878
          Length = 78

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/39 (46%), Positives = 21/39 (53%)
 Frame = -3

Query: 278 WYGSGVTAGSGDHSRFIGIHRGLGSGGRVRYVAEGECGG 162
           W G+GV A SGD    +G+ RGL  GGR R      C G
Sbjct: 13  WIGAGVAAWSGD----VGV-RGL--GGRARRCGAARCDG 44


>03_01_0643 -
           4708245-4708355,4708456-4708800,4709124-4709700,
           4709780-4710462,4710618-4710980,4712199-4712530,
           4712856-4713048,4713748-4713790,4713964-4714052,
           4714186-4714301,4714816-4714935,4715538-4715577
          Length = 1003

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = -1

Query: 646 YLKSPTPWGDLYKKYKFEQVSRVLSVKSARLKSITKNP 533
           Y+ +P+P G   K Y  +++ ++LSV+   +++   NP
Sbjct: 505 YMDAPSPLGSTNKIYLQKRLDKLLSVEQDEIQTTLSNP 542


>09_06_0070 -
           20670387-20670473,20672418-20672645,20673388-20673508,
           20673604-20673702,20673802-20673833
          Length = 188

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 132 WCPLWDLLKFTTTFPLSDIAYTTSTSKTPVYAD-KTAVI 245
           WC  W LL F TT  L  I Y T  S  P+Y + K A++
Sbjct: 40  WCQYWILLAFLTT--LETITYFT-VSWLPMYGEAKLALV 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,557,299
Number of Sequences: 37544
Number of extensions: 389887
Number of successful extensions: 1184
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1182
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)