Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c08r
         (733 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)               31   0.73 
SB_36259| Best HMM Match : PHD (HMM E-Value=5.3e-05)                   30   1.7  
SB_15750| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_41295| Best HMM Match : FTCD (HMM E-Value=5.6)                      28   6.8  
SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_14272| Best HMM Match : Sugar_tr (HMM E-Value=0.0046)               28   9.0  

>SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)
          Length = 3561

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -3

Query: 275  YGSGVTAGSGDHSRFIGIHRGLGSGGRV 192
            YGS    G G    F+G H G G+GGRV
Sbjct: 1788 YGSIRANGGGSPQEFLGRHGGAGAGGRV 1815


>SB_36259| Best HMM Match : PHD (HMM E-Value=5.3e-05)
          Length = 790

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 610 CTDRPMALDFSSRLRTDSSRNTFALHPSNCHRRY 711
           CT  P+AL  SS+L  DS  N F +HP   +++Y
Sbjct: 5   CTFTPIALLLSSKLDFDSPEN-FLIHPGLIYQQY 37


>SB_15750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 487

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = -1

Query: 175 GNVVVNFKRSHNGHHXWGPPIQKXLTTAGITNEF--TAMETISFGFNV-DASXKVSIGN 8
           G V +N KRS      +   +Q    +A   N+F  T   T+SFG  V +A+  VSI N
Sbjct: 127 GTVTINLKRSSTTFEAFSLELQTTNRSAVQGNDFSYTNPTTVSFGILVNEATTTVSITN 185


>SB_41295| Best HMM Match : FTCD (HMM E-Value=5.6)
          Length = 322

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 276 PXLAPIVIDSVTXSLLPQVDVYEKPVL 356
           P L+ IVI +   SL  ++D+Y+KPV+
Sbjct: 12  PNLSVIVILNFITSLFSKLDIYDKPVV 38


>SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4085

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -1

Query: 163  VNFKRSHNGH-HXWGPPIQKXLTTAGITNEFTAMETISFGFNVDASXKVS 17
            + F R + G+ H   PP+    T  GI + F  +   + GFN+     VS
Sbjct: 1517 LQFVRQYEGYQHIPAPPLSMICTLCGIISGFFDLIMANGGFNIQEQTLVS 1566


>SB_14272| Best HMM Match : Sugar_tr (HMM E-Value=0.0046)
          Length = 775

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = -1

Query: 421 KAFSITQEIEYDINVMFTKVSGKTGFSYTSTWGKSEXVTESITIGASXGMEAELQPGQAI 242
           K FS +  +    +V+  +V+G++  +  S  GKS   TES+   +S   E      +  
Sbjct: 538 KVFSASPRVLSKSSVISVRVTGESSVTTESVLGKSSVTTESVFGKSSVTSEIGFPYRKCF 597

Query: 241 TAVLSAY 221
             VL  Y
Sbjct: 598 RQVLGNY 604


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,125,098
Number of Sequences: 59808
Number of extensions: 421233
Number of successful extensions: 1185
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)